XLOC_016928 (chico)


Basic Information

Item Value
gene id XLOC_016928
gene name chico
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52406565 ~ 52455525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033086
AGCGTCACACGAGTCCGTCCATACGAGTCCTGAAGCGGCGGAAGAGGCATGATTTTCCAAGCACAgcctgctctttcaccgcctatACCCAGACGTACACAGTATTAGCGAATGTACGACCAAATCTAGACGGTTTTTCATCATATCCAAACGCGCTGCGCTCGCTTTCCGCGACGTAAACTTATCTgttagctttagcctgctagcttGTCTCAGAATTTCTGCAAGTATGATCAGCCTGGCGGTGGATTAATCGCTGAAACTGGCCTATTTCGACAGAAGATTCATTTGTCGTGTGTGAAAACCGCAATGTCACATGCTGTTGTAAAGATAGCCTGTTGTTTTTGTATTTCCGAAAGCAGAACTGTCTGAAGTTGACGTAGGATTTGAAGTAGAAAATCCATAGCCCAGATCAGCCCAGGGAGAACAGACTGAAGCCTTTCTGCCTTCAAACTGATCAAGTTTAGACCGAACAAAGAGGACATCCACTCAAACCCCGCTTACTTCATCTGCAGAGAGAGAATAAAGCACAAACACAGGCTGATATGATGTTTCCACAAGCCAGGCACTCGGCTTCGTCTCAATCGACACAGCCGCTGAAATTCACCACGTCAGACTCTTGTGATCGCATCAAGGATGAGTTTCAGTTCCTGCAGGCACAATATCACAGCCTGAAGTTGGAATGTGATAAACTGGCAAGTGAGAAATCAGAAATGCAGCGTCATTACATAATGTATTATGAGATGTCGTATGGACTCAACATCGAAATGCACAAACAGGCGGAGATTGTGAAGAGATTGAACGGGATCTGTGCTCAGGTGTTGCCGTACCTGTCTCAAGAGcacCAGCAGCAGGTTCTAGGGGCGATTGAACGAGCCAAACAGGTCACCCCTCCTGAGATGAACTCCATTATCCGGCAGCAGCTTCAGGTTCACCAGCTCTCTCAGCTCCAGGGTTTGGCTTTACCCATGACCCCTCTGCCCCTTGGCTTGACCCCACCGACCCTGCCCGCCGTCACCTCCAGCTCGGGCCTGCTGTCGCTGTCCAGCATCCTGGCCTCCCACGCACACCTCGCCAAAGAGGACAAGAGCTCCCGCGACGCTGCCGACGGCCACCGTGACGAGGACGCAGACAAATCCGACTAGCCTTCACGCAGACGGTTCGAGTCTGATTCTTGAGTTCTGTGAAGAGGGACGGAGcgcagacagagagagagctttTCCTCTTCATGTCTGTCTCATTGAGTTGGGTCTGATTCAGTCTGTCTTTCTGCTACTACAGCCAATCTTTCCTGCGTAACACTGTTTGATTCTTTTGCTTTTCATTAGTGGGCCTGCTAAAATTTCTGTTACTATTGCTTATACTCCGGGGGTTAGTGATCAAAACAGCTCTCAAACCCAGAGTATTGAACTTCAGCATGTAACATACCTCAAAATCATGTGTGTATTATTACTTTAAGTAAAttagacagattttttttacagacaaTAAAACTGATGATAATTGATTAGA
>TCONS_00033085
AGCGTCACACGAGTCCGTCCATACGAGTCCTGAAGCGGCGGAAGAGGCATGATTTTCCAAGCACAgcctgctctttcaccgcctatACCCAGACGTACACAGTATTAGCGAATAACTGTCTGAAGTTGACGTAGGATTTGAAGTAGAAAATCCATAGCCCAGATCAGCCCAGGGAGAACAGACTGAAGCCTTTCTGCCTTCAAACTGATCAAGTTTAGACCGAACAAAGAGGACATCCACTCAAACCCCGCTTACTTCATCTGCAGAGAGAGAATAAAGCACAAACACAGGCTGATATGATGTTTCCACAAGCCAGGCACTCGGCTTCGTCTCAATCGACACAGCCGCTGAAATTCACCACGTCAGACTCTTGTGATCGCATCAAGGATGAGTTTCAGTTCCTGCAGGCACAATATCACAGCCTGAAGTTGGAATGTGATAAACTGGCAAGTGAGAAATCAGAAATGCAGCGTCATTACATAATGTATTATGAGATGTCGTATGGACTCAACATCGAAATGCACAAACAGGCGGAGATTGTGAAGAGATTGAACGGGATCTGTGCTCAGGTGTTGCCGTACCTGTCTCAAGAGcacCAGCAGCAGGTTCTAGGGGCGATTGAACGAGCCAAACAGGTCACCCCTCCTGAGATGAACTCCATTATCCGGCAGCAGCTTCAGGTTCACCAGCTCTCTCAGCTCCAGGGTTTGGCTTTACCCATGACCCCTCTGCCCCTTGGCTTGACCCCACCGACCCTGCCCGCCGTCACCTCCAGCTCGGGCCTGCTGTCGCTGTCCAGCATCCTGGCCTCCCACGCACACCTCGCCAAAGAGGACAAGAGCTCCCGCGACGCTGCCGACGGCCACCGTGACGAGGACGCAGACAAATCCGACTAGCCTTCACGCAGACGGTTCGAGTCTGATTCTTGAGTTCTGTGAAGAGGGACGGAGcgcagacagagagagagctttTCCTCTTCATGTCTGTCTCATTGAGTTGGGTCTGATTCAGTCTGTCTTTCTGCTACTACAGCCAATCTTTCCTGCGTAACACTGTTTGATTCTTTTGCTTTTCATTAGTGGGCCTGCTAAAATTTCTGTTACTATTGCTTATACTCCGGGGGTTAGTGATCAAAACAGCTCTCAAACCCAGAGTATTGAACTTCAGCATGTAACATACCTCAAAATCATGTGTGTATTATTACTTTAAGTAAAttagacagattttttttacagacaaTAAAACTGATGATAATTGATTAGA

Function

symbol description
chico Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000210-28 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE5 (TLE family member 5, transcriptional modulator).

Ensembl:

ensembl_id ENSDARG00000019588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033086 False 1512 mRNA 0.48 7 52406565 52455525
TCONS_00033085 True 1263 mRNA 0.49 8 52406565 52455525

Neighbor

gene id symbol gene type direction distance location
XLOC_016927 tle2c coding downstream 41314 52332022 ~ 52365251 (-)
XLOC_016926 NA coding downstream 202493 52202119 ~ 52204072 (-)
XLOC_016925 NA coding downstream 302955 52100990 ~ 52103610 (-)
XLOC_016924 scn12aa coding downstream 386516 51888033 ~ 52020049 (-)
XLOC_016923 BX908782.1 coding downstream 556294 51850157 ~ 51850271 (-)
XLOC_016929 NA coding upstream 10010 52465535 ~ 52468939 (-)
XLOC_016930 gna11b coding upstream 14329 52469854 ~ 52550135 (-)
XLOC_016931 NA coding upstream 172727 52628252 ~ 52681788 (-)
XLOC_016932 LO018490.1 coding upstream 326531 52782056 ~ 52795722 (-)
XLOC_016933 ralbp1 coding upstream 355337 52810862 ~ 52841762 (-)
XLOC_016909 NA non-coding downstream 922241 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 929510 51473913 ~ 51477055 (-)
XLOC_016934 NA non-coding upstream 472171 52927696 ~ 52929721 (-)
XLOC_016944 NA non-coding upstream 1697925 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 2271781 54727306 ~ 54727426 (-)

Expression


Co-expression Network