XLOC_016929


Basic Information

Item Value
gene id XLOC_016929
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52465535 ~ 52468939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033968
AGCTGTACGCGTGGAGGATGAACGTGATTTTTAATCTAAAATGCACACGGTTATGATGAGCAATAGTCTGAGAGATTCTAGACTTCGGAAAAAAAGCATCAGAGAAGGAGCGCGCCTCCTCTATGGTGTGAATGTTATATgagataagaataaaaaaatcagatttttaagcaaaagattaattaaataaagaacgttttatttatataatttatggaCCAGATCTGAAGTTGTTGATAATTTGAATGCTATTGTTTCCTCTTCTGCTATATGAAGCACTCCCATGTTATGAGACAGAAATAGGAGACTAGTGTCTGTACTGCTGTATAAAACCTCCGTTATGGATACAAAtatcagctttttttttcttcttctcaaaacacacaatatattgtaCTATATTTCCCTGAACACACTTTTCACTTTTTCTTTTATTCGATTGTTAAATTTCCAGATGATGTTTAGGTGAAGTGCTTAACAACAAACATAGGAACTGTACCATATGAGAATAGACAGCTTTTTATCTGTGATTGAAGATCTATTTGGTCGACGCTTTGCAagcagtgactttttttttttgttgtctttcTTTCGATTCTGATTTCGTTTCGATTTCTTTCTAAATTCACGGCTTGTTTCCTTCATTGTGTACGTGATGCAAAGATagacgaagaaaaaaaaacaagtattctACAGTTCTTTTACAGTCGATATTTTATACAGGTgatgtttcattcattttcatcaagGGCTACGAAAAAAAATGTGCCGTGCGAAATCCTGAAACGATTGGTCACTGTCGGACGTGCGAGGAGAAACTTCACTTTTGTGATCGGTTTGAGCAGATTCAGAAATGCACCCATTTCCACCACGTGTTACTTCTTATTTGATCACTTTTGCTGCCATGCATCGGAGTTCATCACGTGCCACGGTCATCAGACTCTTTCTTGATGGATATAAAACCTGACGTGTTCTTTGTAAAACGAAACCTGTGTGAACTCAGTGTTTTAGTGGGGTTTGGAAATCTCACCATTTTGTAACTCCAGTGTTTTCTTAGATATCCGTAGTGAGTTAGATTTGAAGAAACCAATGATACCAAGCAAACCATGGAGCACTAGACCATCCGAAATACCATAGTATTGACGCATTTCATTCTTCGAATGAATCTTTTGACATTGAGTTCAAGGCTCTGCCCACTATAAGAACGTATTAGATGCATTGCTTCTGGAAGGGgaggtttatttgtttattttgcatcATTCTTAATGCACTTTTTGGGTTTTTTCGTGCCACAAGGCGAATGCCTGAAATGCTTAGACCGTTTGAGCAACACATATCCATTAATGTGCCAGTTCCAGAAGTCTCATATTGAACGTTCCCTCAAGAACCTCTACCTCTGTGAACCGTCTTATGTTTTTCGGGGCATTTTAGGATTGGTAGACATGCGACAAGCACACTTCTTTAGTCCGCAGGGCACAGTTGATGAGGTTTGGAGGCCaaactttgtttgtttattggatCTTGCCAATGACCTGCATGTATTGTCTGCGCTTCAAACACTGAACACAGCAAACAGCACTTTCCTCAGGTCAGATGTGATTTGTTGGCCGGCTTCTGAGTGGAAAAAATAGTACCAGTTTTGGATTATGAATCGTTTGCCTGGAGCTTTACGCTTTGGTTCTGCAGTTGATAGTTTTCACGTGACATCACACACAAAACTTCACTATCTCCTGCTGACCGACAAGTATTTTAGCCAAAAAGCAAGAAAACTGTTATGCAATAAGATATAGTATTACTAACCAATAAGGAGACACATCTAGGGTGTCcttctacacaattccttcatagAAAGATCAGCCAGAAAGGAGAAATGTACGGATATGTGCCGAATGGTAGCATGGTTGACCCATAACAATCCTTTAGCTGTCTCTATTCTATACAGTTTCTATTGTAATTTGCAGGTTAAGTGCAATTAAAGTATAAATTCCAATGCAAAAGTCAAACTATGAATCGCTCAATTGAACAAATAGATTTCATCCACTAatccaagcaaaaaaaaaaaaacgacgtCAAACATACAAGCAGACACTTGAGCTTAACACAGATCCTTCTCGGAGCTCTCTACTTATCTAAATCATATGTGTTAAACAAGTTAGACATGCAAAATAAACAGCGCAAGGACCTGGATTGAGAATCGCTAGTCTTTCCAAACTGGATATATCGCCCTCATAAGGACACTTTAGAGTTAAAACAATCATGGCCGACATAATGGGGTTGCTCCAAACCGAAGTGCGCAAAATCAGCCACTTCGAATGGGTTTTCTAATTGAAAAGTACAACTGGTGGACACGTCGGTCCCCTATGATCCTCTGCGTAGGGAAGTTGTTTGGTGTCAAACAGCATGCTTCATTCAGAATGGTTCCTCCCTATGTCATAATCCCTTTGAAGCGGTCGCTCCCTTTAAAGATATTAGGGCATATTGATGAAATTTTCCAAATGGAACTTCTGTAGTAGCTCAAAATTAGCCTCTTCGTAGGGGTCTTCTGAATGAAGGGTTTTGCTGGTGGACGCTTCGGGCCCCCATGATCTTTTGGGTAGGGAAGTTGTTTGGTGTCAAACAGCACGATTCATTCAGAATGGTTCCTCACTATGCCATAATCCTTTTGAAGCGGTCACTCCCTTCAAAGACATTAGGGACTTGAGTGCACTTTTTATATAGTTTCTAATTTGCAGGCTAAGTGCAATTTTAGTATACATTCAAATGCTGAAGTCAAAATATGAATAGCTAAAGAGAACAAATAGATTCCGTTCACTAGCAGTAAATATTAATCTAAGCAAAAGAAACCGACACCAAACATAAAAGCAGACAATTGAGCGCGCTTTTCATGTAGTTTCTAATCTAATTTGCAGGTTAAGTGCAATTAAAGTATGAACTGAAATGCGAAGTTAAAGCAGAAGTAAACAAATAAGATTCATCCAAGCTAAAGAAACCGACACCAAACACAAAAGCAGACACTTTTCCACATAAATCCATCACTAATGactaaatctctgaggaatattcacAAGATAAAGGTAAACATCACCAGATTGGAGCTGTAACAGAGAGATGACAGTTTGAAATGACTGAGAAATGGCTGCAAGTGCAGAATATGGATCACAAGTGCTCACAATTTACTGTTTGTGATTATATCTCATTTTATATGTGATCCAAATATTCGTAACTTCAAACGTATGGAAAtttgagcagatttttttttacaattttagggAGATCACATTGTAGCTGCCGTTACGGCCTATTGTTTTTTTGCCCGGTCTCCAGGCAGGTCACGTGACTGAAAACTATCAACGGACAGATGAATAGACATATCGGTACTGACGGCTGTTTTCAAAGGCAGTTTAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033968 True 3405 lncRNA 0.38 1 52465535 52468939

Neighbor

gene id symbol gene type direction distance location
XLOC_016928 chico coding downstream 10010 52406565 ~ 52455525 (-)
XLOC_016927 tle2c coding downstream 100284 52332022 ~ 52365251 (-)
XLOC_016926 NA coding downstream 261463 52202119 ~ 52204072 (-)
XLOC_016925 NA coding downstream 361925 52100990 ~ 52103610 (-)
XLOC_016924 scn12aa coding downstream 445486 51888033 ~ 52020049 (-)
XLOC_016930 gna11b coding upstream 915 52469854 ~ 52550135 (-)
XLOC_016931 NA coding upstream 159313 52628252 ~ 52681788 (-)
XLOC_016932 LO018490.1 coding upstream 313117 52782056 ~ 52795722 (-)
XLOC_016933 ralbp1 coding upstream 341923 52810862 ~ 52841762 (-)
XLOC_016934 NA coding upstream 458757 52927696 ~ 52929721 (-)
XLOC_016923 BX908782.1 non-coding downstream 615264 51850157 ~ 51850271 (-)
XLOC_016909 NA non-coding downstream 981211 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 988480 51473913 ~ 51477055 (-)
XLOC_016944 NA non-coding upstream 1684511 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 2258367 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 2314885 54783824 ~ 54787578 (-)

Expression


Co-expression Network