XLOC_016931


Basic Information

Item Value
gene id XLOC_016931
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52628252 ~ 52681788 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033969
TGACTCCCTAAATTAAGATGGCTCCTTACATTGTTAGCTTGGCGTTGACAATGCGCAACATGTGCCTGAAACATTTGCCCAGTTTTGTTTAAATTGCTTAAATAAATTAATCTCACTTAtgtctttttacattttattttttgagagtGAGCAGACTTTTTTCCAGTTACCTCATTCAATATCACCAACCAAACAATGTCTTCATAATTCCTGCAGCTTCAGAGTTGCTGCTTAAATCCACCAAGAACATAAGAGGTCTTCGAAGTGTGCACTACCCAGGGTACTTTCTTCACCAGTCTAGCAATGGATGGATTTCTCCAGATTCACTGCTCAATCGGCTCGGTGGAATAATTGGAGAAAATGTCTGTCATTGGAAGCTCTTTTCTTATTGTGCCGCTGCTCACAATCCTCAGCTTACAGTGATGGAGAGATGCTCATATGGAGGAGAGCTTCAGCACACGATGAGATCCGCTGAGCGTGGTTATTATGACATTACAGTATGTGATACTGACATTCGTGTATAGTGGATTACTGtgcaataaatcaaaacaaatggGGAATTCAAGACTTCAG
>TCONS_00033970
CTTGGTCTGGTTTGATCACATGACATACATAATCATCATGTGACTCCCTAAATTAAGATGGCTCCTTACATTGTTAGCTTGGCGTTGACAATGCGCAACATGTGCCTGAAACATTTGCCCAGTTTTGTTTAAATTGCTTAAATAAATTAATCTCACTTAtgtctttttacattttattttttgagagtGAGCAGACTTTTTTCCAGTTACCTCATTCAATATCACCAACCAAACAATGTCTTCATAATTCCTGCAGCTTCAGAGTTGCTGCTTAAATCCACCAAGAACATAAGAGGTCTTCGAAGTGTGCACTACCCAGGGTACTTTCTTCACCAGTCTAGCAATGGATGGATTTCTCCAGctcctctctgcatctccagTCCGCTGAagtacacgacaagctaactggacaaactggttgcggcgggaaagccctccac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033969 False 573 lncRNA 0.40 2 52628252 52681748
TCONS_00033970 True 440 lncRNA 0.42 2 52655481 52681788

Neighbor

gene id symbol gene type direction distance location
XLOC_016930 gna11b coding downstream 78117 52469854 ~ 52550135 (-)
XLOC_016929 NA coding downstream 159313 52465535 ~ 52468939 (-)
XLOC_016928 chico coding downstream 172727 52406565 ~ 52455525 (-)
XLOC_016927 tle2c coding downstream 263001 52332022 ~ 52365251 (-)
XLOC_016926 NA coding downstream 424180 52202119 ~ 52204072 (-)
XLOC_016932 LO018490.1 coding upstream 100268 52782056 ~ 52795722 (-)
XLOC_016933 ralbp1 coding upstream 129074 52810862 ~ 52841762 (-)
XLOC_016934 NA coding upstream 245908 52927696 ~ 52929721 (-)
XLOC_016935 sirt6 coding upstream 383251 53065039 ~ 53201908 (-)
XLOC_016936 hsd11b1lb coding upstream 778085 53459873 ~ 53481912 (-)
XLOC_016925 NA non-coding downstream 524642 52100990 ~ 52103610 (-)
XLOC_016923 BX908782.1 non-coding downstream 777981 51850157 ~ 51850271 (-)
XLOC_016909 NA non-coding downstream 1143928 51483547 ~ 51484324 (-)
XLOC_016944 NA non-coding upstream 1471662 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 2045518 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 2102036 54783824 ~ 54787578 (-)
XLOC_016950 NA non-coding upstream 2301535 54983323 ~ 54984653 (-)

Expression


Co-expression Network