XLOC_016935 (sirt6)


Basic Information

Item Value
gene id XLOC_016935
gene name sirt6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53065039 ~ 53201908 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033091
ACACGTACAACCAAACACACAGAACCGACTAAACGGAAGACCACAAACTTGcttttacatacatatatttacattttaacaaggAAATCAGTCATGTCGGTGAATTACGCCGCAGGACTGTCTCCATACGCGGATAAAGGTATCTGCGGTCTGCCGGAGaCATTCGACAGTCCTGAGGAGCTGAAGACTAAAGTGGAGACTCTGGCCCAGTGGATCAGAGAGTCTCAGTACATGGTGGTTCATTCAGGAGCTGGAATCAGTACGTCTACAGGCATACCCGACTTCAGAGGTCCTAATGGTGTGTGGACGATGGAAGAGAGAGGGGAGACTCCACACTTTAACACCACGTTTGAGGACGCTCGACCCAGCCTGACTCACATGGCTCTGCTGCAGATGCAGAGGACAGGACACCTCAAATACCTCATCAGCCAAAACGTTGATGGCCTTCACGTACGCTCTGGCTTCCCCAGGGATCGATTGTCGGAGCTGCATGGGAACATGTTTGTTGAAGAATGTGAGAAGTGTGGCAAGCAATACGTTCGGGACACGGTGGTCGGAGTGATGGGACTGAAGCCGACTGGAAGATACTGCGACGTCATGCGCTCCAGAGGACTACGATCCTGCAGAGGGAAGCTGATCAGCTCTATATTGGACTGGGAGGACTCTCTGCCCGACAGAGACCTGAACAGAGCTGATGAGGCGAGCAGGCGAGCTGATCTGGCTTTGACACTGGGGACGTCTCTTCAGATTAAACCCAGCGGAGATCTGCCTCTTCTGACCAAACGAACAGGAGGAAAACTGGTTATAGTTAACCTTCAGCCTACCAAACATGACAAACACGCTCACCTGCGTATATACGGTTACGTCGATGATGTCATGGGTCAGCTCATGAAGCTGCTGGGATTGGACGTTCCGGAGTGGGCCGGGCCAACCCTCTGCGAAGACTCGGGTGGAGATCTGGACATCCTGCCATACGGAGCCTGGAAGAAGGAAGTGAAGATCGAGCTGAAGATCGAGGAGAGTAAACACACCGTCTCAAAGAAACGCAAGAGGAAAGAGCAGCACGCTGAGGAGGACTACAAGAATGGTGTTAAAGTAGAAGAAGAGATGAAAGAAGAGGGAAAGGAAAGTGACtctcacgtacacacacacacttgaacagACCTCTTCATAGAGCTGGAACACACAGACACTGAACCCCAGACTCACTGTTTCCACTGTGTTTACATTATAACGCCTGTCAGATGCTGAATTTGTGCAAGTACACCGAGTAGGAGGAGGAAGTGATGTCATAGGGCCACGAGTGTGAGTTAGCTGAGCTTTTAGGTTGCCACTTGACCTCTGCAGTTATTGTGGATGGAGATGAATCGTGGTTTTGTACTGTCAAGTTTATTCTAACTTCAATTAAATCAGGTttg
>TCONS_00033090
ACACGTACAACCAAACACACAGAACCGACTAAACGGAAGACCACAAACTTGcttttacatacatatatttacattttaacaaggAAATCAGTCATGTCGGTGAATTACGCCGCAGGACTGTCTCCATACGCGGATAAAGGTATCTGCGGTCTGCCGGAGaCATTCGACAGTCCTGAGGAGCTGAAGACTAAAGTGGAGACTCTGGCCCAGTGGATCAGAGAGTCTCAGTACATGGTGGTTCATTCAGGAGCTGGAATCAGTACGTCTACAGGCATACCCGACTTCAGAGGTCCTAATGGTGTGTGGACGATGGAAGAGAGAGGGGAGACTCCACACTTTAACACCACGTTTGAGGACGCTCGACCCAGCCTGACTCACATGGCTCTGCTGCAGATGCAGAGGACAGGACACCTCAAATACCTCATCAGCCAAAACGTCGATGGCCTTCACGTACGCTCTGGCTTCCCCAGGGATCGATTGTCGGAGCTGCATGGGAACATGTTTGTTGAAGAATGTGAGAAGTGTGGCAAGCAATACGTTCGGGACACGGTGGTCGGAGTGATGGGACTGAAGCCGACTGGAAGATACTGCGACGTCATGCGCTCCAGAGGACTACGATCCTGCAGAGGGAAGCTGATCAGCTCTATATTGGACTGGGAGGACTCTCTGCCCGACAGAGACCTGAACAGAGCTGATGAGGCGAGCAGGCGAGCTGATCTGGCTTTGACACTGGGGACGTCTCTTCAGATTAAACCCAGCGGAGATCTGCCTCTTCTGACCAAACGAACAGGAGGAAAACTGGTTATAGTTAACCTTCAGCCTACCAAACATGACAAACACGCTCACCTGCGTATATACGGTTACGTCGATGATGTCATGGGTCAGCTCATGAAGCTGCTGGGATTGGACGTTCCGGAGTGGGCCGGGCCAACCCTCTGCGAAGACTCGGGTGGAGATCTGGACATCCTGCCATACGGAGCCTGGAAGAAGGAAGTGAAGATCGAGCTGAAGATCGAGGAGAGTAAACACACCGTCTCAAAGAAACGCAAGAGGAAAGAGCAGCACGCTGAGGAGGACTACAAGAATGGTGTTAAAGTAGAAGAAGAGATGAAAGAAGAGGGAAAGGAAAGTGACtctcacgtacacacacacacttgaacagACCTCTTCATAGAGCTGGAACACACAGACACTGAACCCCAGACTCACTGTTTCCACTGTGTTTACATTATAACGCCTGTCAGATGCTGAATTTGTGCAAGTACACCGAGTAGGAGGAGGAAGTGATGTCATAGGGCCACGAGTGTGAGTTAGCTGAGCTTTTAGGTTGCCACTTGACCTCTGCAGTTATTGTGGATGGAGATGAATCGTGGTTTTGTACTGTCAAGTTTATTCTAACTTCAATTAAATCAGGTttg
>TCONS_00033419
GCAAACTCTCTGACGTAATCCCGTATGTGCGCAGCATTTCTACACGTTCTACACACAATTGTGACGTCACACGTACAACCAAACACACAGAACCGACTAAACGGAAGACCACAAACTTGcttttacatacatatatttacattttaacaaggAAATCAGTCATGTCGGTGAATTACGCCGCAGGACTGTCTCCATACGCGGATAAAGGTATCTGCGGTCTGCCGGAGaCATTCGACAGTCCTGAGGAGCTGAAGACTAAAGTGGAGACTCTGGCCCAGTGGATCAGAGAGTCTCAGTACATGGTGGTTCATTCAGGAGCTGGAATCAGTACGTCTACAGGCATACCCGACTTCAGGTACTGTCAAAGACTGCAGCAATGCagttaaatacaaaattatttatcCTTCTGGCATTTGTtttcccaagtgttgtttaacagagataatttttttcaacgcattttttttttcaacttcgaTGAAAATATATAGAGAATTACTTTCGCAtatcgagatgtacatgatatatgtgtgtgtgtgtgctggtgctcatgggctgtttcatgggcacacgcaaagcttgaaggtaaacaaacaacggcttatcataagcatcttatcgataattatttacacggttggcattaagatgaacatataaacgttatctgactaatttctagc

Function

symbol description
sirt6 Predicted to enable NAD+ binding activity and transferase activity. Is expressed in liver and retina. Orthologous to human SIRT6 (sirtuin 6).

GO:

id name namespace
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko04714 Thermogenesis
ko05230 Central carbon metabolism in cancer
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-031007-2 Predicted to enable NAD+ binding activity and transferase activity. Is expressed in liver and retina. Orthologous to human SIRT6 (sirtuin 6).

Ensembl:

ensembl_id ENSDARG00000102963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033091 False 1418 mRNA 0.50 8 53065039 53201840
TCONS_00033090 False 1418 mRNA 0.50 8 53065039 53201840
TCONS_00033419 True 683 lncRNA 0.41 2 53196803 53201908

Neighbor

gene id symbol gene type direction distance location
XLOC_016934 NA coding downstream 135318 52927696 ~ 52929721 (-)
XLOC_016933 ralbp1 coding downstream 223277 52810862 ~ 52841762 (-)
XLOC_016932 LO018490.1 coding downstream 269317 52782056 ~ 52795722 (-)
XLOC_016931 NA coding downstream 383251 52628252 ~ 52681788 (-)
XLOC_016930 gna11b coding downstream 514904 52469854 ~ 52550135 (-)
XLOC_016936 hsd11b1lb coding upstream 257965 53459873 ~ 53481912 (-)
XLOC_016937 admp coding upstream 281414 53483322 ~ 53500424 (-)
XLOC_016938 im:7138239 coding upstream 299842 53501750 ~ 53525896 (-)
XLOC_016939 ccl25a coding upstream 380449 53582357 ~ 53592532 (-)
XLOC_016940 capsla coding upstream 688098 53890006 ~ 53896300 (-)
XLOC_016929 NA non-coding downstream 596100 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 860967 52202119 ~ 52204072 (-)
XLOC_016925 NA non-coding downstream 961429 52100990 ~ 52103610 (-)
XLOC_016944 NA non-coding upstream 951542 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 1525398 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 1581916 54783824 ~ 54787578 (-)
XLOC_016950 NA non-coding upstream 1781415 54983323 ~ 54984653 (-)
XLOC_016951 NA non-coding upstream 1857918 55059826 ~ 55071544 (-)

Expression


Co-expression Network