XLOC_016940 (capsla)


Basic Information

Item Value
gene id XLOC_016940
gene name capsla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53890006 ~ 53896300 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033096
AACAAAGACCACCAAAAGGACACACAGCAGGTATCAGTAATGGCAGCAGACGCTTTGCAGGATCTCCGACAGCAGTGCCTCAGCCGAGGAGCCGCGGGAATCAAGGGTCTTGGAAGGATGTTTCGCAGTATGGACGACGACGGCAGTAAATCTCTCGACTTCCAGGAGTTTGTCAGAGGTCTGCAGGATTATGGCGTGTCTGTGGGGAGAGATCAAGCGCAGCAGATCTTCGCCATGATGGACAAGGATGGAAGCGGCAGCATCAACTTCGACGAGTTTCTGGAGAAATTAAGACCACCCATGTCGAGCGCACGGATGCAGGTCATCAGACAGGCTTTCCAGAAGTTTGATAAGAGCGGAGACGGCGTCGTGACCGTGGAGGATCTGCAGGGTGTTTACAACAGCAAACATCACCCCAAATACAAGAGCGGCGAGTGGACAGAAACACAAGTCTTCCACTCTTTCCTCGACAGCTTTGACTCTCCACATGACAAAGATGGAAAGGTGACCCTGGAGGAGTTTGTGAATTACTACAGCGGCGTCAGCGCTTCTGTCGACAGTGACGAGTACTTCATCTCCATGATGAAGAGCGCATGGAAGCTGTAGGCTTTTCATTTGTCATTAGAAATCAGATTGGAACCTGCAATATTTACATGTAGAAATCATGTCTCATTAAAGGGCTTTGATTTAGGCCTCTTGGTTTAATGTTTCACACATTGCTGCTTCTCAGAAGATGGAGTTGAATCTGATCGAAGTTTTTATCAGGTCAAAATCTGGCGTTGTGAAAGACGAGAGCTTCAAAAAGGTCTTTATTGATTTCTCTGACAAACACTGTTCAATCAGCTGATAAACGCCAGCAGCTGCTCGTGTTAAACTCCGCTCATTCATTAGGGGTGTGTTTGTGGCGCCACCTGCTGAACACTCACGACATGACACCATCAATGAATAAATATCGTAAAACC

Function

symbol description
capsla Predicted to enable calcium ion binding activity. Is expressed in hypophysis; otic vesicle; pronephric duct; sensory system; and tail bud. Orthologous to human CAPSL (calcyphosine like).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7291 Predicted to enable calcium ion binding activity. Is expressed in hypophysis; otic vesicle; pronephric duct; sensory system; and tail bud. Orthologous to human CAPSL (calcyphosine like).

Ensembl:

ensembl_id ENSDARG00000103521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033096 True 962 mRNA 0.48 5 53890006 53896300

Neighbor

gene id symbol gene type direction distance location
XLOC_016939 ccl25a coding downstream 297474 53582357 ~ 53592532 (-)
XLOC_016938 im:7138239 coding downstream 364110 53501750 ~ 53525896 (-)
XLOC_016937 admp coding downstream 389582 53483322 ~ 53500424 (-)
XLOC_016936 hsd11b1lb coding downstream 408094 53459873 ~ 53481912 (-)
XLOC_016935 sirt6 coding downstream 688098 53065039 ~ 53201908 (-)
XLOC_016941 FO834855.1 coding upstream 13162 53909462 ~ 53925308 (-)
XLOC_016942 abhd8a coding upstream 119658 54015958 ~ 54039293 (-)
XLOC_016943 CABZ01050249.1 coding upstream 147378 54043678 ~ 54054225 (-)
XLOC_016944 NA coding upstream 257150 54153450 ~ 54155169 (-)
XLOC_016945 napgb coding upstream 467973 54364273 ~ 54387550 (-)
XLOC_016934 NA non-coding downstream 960285 52927696 ~ 52929721 (-)
XLOC_016931 NA non-coding downstream 1208218 52628252 ~ 52681788 (-)
XLOC_016929 NA non-coding downstream 1421067 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 1685934 52202119 ~ 52204072 (-)
XLOC_016925 NA non-coding downstream 1786396 52100990 ~ 52103610 (-)
XLOC_016947 FQ378001.1 non-coding upstream 831006 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 887524 54783824 ~ 54787578 (-)
XLOC_016950 NA non-coding upstream 1087023 54983323 ~ 54984653 (-)
XLOC_016951 NA non-coding upstream 1163526 55059826 ~ 55071544 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00877796_00880322 NA coding CI01000075 null 877796 ~ 880444 (+)
bowfin (Amia calva) AMCG00006019 NA coding CM030142.1 CM030142.1 14546944 ~ 14549687 (-)