XLOC_016944


Basic Information

Item Value
gene id XLOC_016944
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54153450 ~ 54155169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033972
gctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGTCTCAAAGTGTCAGGTAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGATCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATACAAGTTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATTACAGAAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGAGATTTATTGCTGAAACAGTGGAGATAGCATGCTTTCTATTTAGTCGATAACACTGTAATTAAATGGGAGGGTGACCCAAAACAATAAGGTGTCATTAgttaatttcacatcaacaatttgtctatttcaatatttattagttttttacattaatgaacaaatgcttattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatttttattcattagtaaattagtttaacaatgttaactattaaatattaaatagttattttaatagtgagcaaatacattaattaatgaaaagttattttaaagtgtgactaaagggagctacttttaaataatttaaattaattatttactgtgtagtttaatctgatgatattgctgcagatgcctttaaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtatgaaaaagaaCTACTATGAATACCAGTGGTtgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactctctttaaaaacctattaatattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAAGTTTATGTGTAACTTCATCCTGGAGTGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCACTTGTGTGGCTGAGAGTGGGATTTGCAAACATTTGGTTGCTTTGCTTTTCCAGACAGCCCATTactctgaaatgtgtaatgtgtgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagatgggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTTATTGTTTCTgttcatctgaataaaatatttttttcaaaatgtta

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033972 True 1720 lncRNA 0.35 1 54153450 54155169

Neighbor

gene id symbol gene type direction distance location
XLOC_016943 CABZ01050249.1 coding downstream 99225 54043678 ~ 54054225 (-)
XLOC_016942 abhd8a coding downstream 114157 54015958 ~ 54039293 (-)
XLOC_016941 FO834855.1 coding downstream 228142 53909462 ~ 53925308 (-)
XLOC_016940 capsla coding downstream 257150 53890006 ~ 53896300 (-)
XLOC_016939 ccl25a coding downstream 560918 53582357 ~ 53592532 (-)
XLOC_016945 napgb coding upstream 209104 54364273 ~ 54387550 (-)
XLOC_016946 acss2l coding upstream 431478 54586647 ~ 54639964 (-)
XLOC_016947 FQ378001.1 coding upstream 572137 54727306 ~ 54727426 (-)
XLOC_016948 NA coding upstream 628655 54783824 ~ 54787578 (-)
XLOC_016949 CABZ01086574.1 coding upstream 764088 54919257 ~ 54946834 (-)
XLOC_016934 NA non-coding downstream 1223729 52927696 ~ 52929721 (-)
XLOC_016931 NA non-coding downstream 1471662 52628252 ~ 52681788 (-)
XLOC_016929 NA non-coding downstream 1684511 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 1949378 52202119 ~ 52204072 (-)
XLOC_016925 NA non-coding downstream 2049840 52100990 ~ 52103610 (-)
XLOC_016950 NA non-coding upstream 828154 54983323 ~ 54984653 (-)
XLOC_016951 NA non-coding upstream 904657 55059826 ~ 55071544 (-)
XLOC_016952 NA non-coding upstream 1060017 55215186 ~ 55224575 (-)

Expression


Co-expression Network