XLOC_016950


Basic Information

Item Value
gene id XLOC_016950
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54983323 ~ 54984653 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033974
cacacacgcacactcaagTCCCTGTGGCTTCTGATGATACATCGAACTCTTATGAAGCCAAACCATCGTTTcaatttaacattatttacaatgtttaataTACAGCAAACAGTTTTCAGTGCACAGGCCATAATAGTTCTTACCTGTGATTTTCAAAGATGCAGAAACTGCTATTATGCTCACTACTTTCATGTACATGCAGAGAACTGTTTGCctgtaataatattgtaaacaatGTTCAATTTCTTGCACAGTGTGTCATCAGGAGCCACAAGGATTGATTTGgacatgtttgtatgtgtttatttgtaaTCTTAAACATGAgtgaccattgacttgcattatatgaAGTTCCACAGATTCAGCTGAGTCACGTCTTTGGTGGCCTGAGGGTGAgaaaattttctttaatttgtaagaATCATTTTTGCTCTACTCTTTACACTAATGAAAGCCTTTGAGAATGAGATTAGTAAAATTAATAGGAAGCATTGCAGTATGCTAATGAGAATGCTTAATTCTTATGGAAATATGCATATTCAGATTTTTGGGTTGAAACTGGACGTGTTTTTTTGTGATTCACTCAAGTAGTCATAATCATATTCAAGAAAAGGGGAAAAACTGTCAAATTGTGATGAGCTGAGAGATCCAGGAGCATCTGTGACTGAGGAAAGGTTTCTCTCCCGACTCGGCTAACAGAGCAGATCAGATGACCCGA
>TCONS_00033975
AAAGATAACCTTTATTaatcaatagattttttttaagaaaaatacacAAGTCAAGGCAAATAATATACATTACTGCATTAAAAAGCATATACTTGCAGcacatttacaatatatatatatatatatatatatatatatatatatatatatatatacacatatacacacacacacacacacgcacactcaagTCCCTGTGGCTTCTGATGATACATCGAACTCTTATGAAGCCAAACCATCGTTTcaatttaacattatttacaatgtttaataTACAGCAAACAGTTTTCAGTGCACAGGCCATAATAGTTCTTACCTGTGATTTTCAAAGATGCAGAAACTGCTATTATGCTCACTACTTTCATGTACATGCAGAGAACTGTTTGCctgtaataatattgtaaacaatGTTCAATTTCTTGCACAGTGTGTCATCAGGAGCCACAAGGATTGATTTGgacatgtttgtatgtgtttatttgtaaTCTTAAACATGAgtgaccattgacttgcattatatgaAGTTCCACAGATTCAGCTGAGTCACGTCTTTGGTGGCCTGAGGGTGAgaaaattttctttaatttgtaagaATCATTTTTGCTCTACTCTTTACACTAATGAAAGCCTTTGAGAATGAGATTAGTAAAATTAATAGGAAGCATTGCAGTATGCTAATGAGAATGCTTAATTCTTATGGAAATATGCATATTCAGATTTTTGGGTTGAAACTGGACGTGTTTTTTTGTGATTCACTCAAGTAGTCATAATCATATTCAAGAAAAGGGGAAAAACTGTCAAATTGTGATGAGCTGAGAGATCCAGGAGCATCTGTGACTGAGGAAAGGTTTCTCTCCCGGTATTTATTTGCacagtatttttaattatttttgggaACATTATTAGAACACTGAACAAACAGAGAAGTGTGAGTGATGTTTTTTGGcaacatttgatatgttttttttttttgcttcttttttacatttaagttcATGAGAAAACATCTTTTCTCCTCTTCACCCTGTTTTTGGGCTTTTAACCGAACGGCTCAGAATCTCCcttctttttttatctttttagttTTTCTCTCTCCTCAGTCGTCTTCTCTCAGTCTGCTGCACATATTCAGTGACTTTCAAttcaatgcaattttttttaacttattttaagtgaaatgatttgtttttgtaaatcatAATAAAGGAGAAGAATGAGCGAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033974 False 718 lncRNA 0.37 2 54983323 54984480
TCONS_00033975 True 1224 lncRNA 0.32 1 54983430 54984653

Neighbor

gene id symbol gene type direction distance location
XLOC_016949 CABZ01086574.1 coding downstream 36489 54919257 ~ 54946834 (-)
XLOC_016948 NA coding downstream 195745 54783824 ~ 54787578 (-)
XLOC_016947 FQ378001.1 coding downstream 255897 54727306 ~ 54727426 (-)
XLOC_016946 acss2l coding downstream 343359 54586647 ~ 54639964 (-)
XLOC_016945 napgb coding downstream 595773 54364273 ~ 54387550 (-)
XLOC_016951 NA coding upstream 75173 55059826 ~ 55071544 (-)
XLOC_016952 NA coding upstream 230533 55215186 ~ 55224575 (-)
XLOC_016953 rab8a coding upstream 285913 55270566 ~ 55298075 (-)
XLOC_016954 tpm4b coding upstream 315772 55300425 ~ 55337585 (-)
XLOC_016955 NA coding upstream 654718 55639371 ~ 55663975 (-)
XLOC_016944 NA non-coding downstream 828154 54153450 ~ 54155169 (-)
XLOC_016934 NA non-coding downstream 2053602 52927696 ~ 52929721 (-)
XLOC_016931 NA non-coding downstream 2301535 52628252 ~ 52681788 (-)
XLOC_016956 NA non-coding upstream 700015 55684668 ~ 55751698 (-)
XLOC_016962 CU013534.1 non-coding upstream 1057859 56042512 ~ 56042630 (-)

Expression


Co-expression Network