XLOC_016955


Basic Information

Item Value
gene id XLOC_016955
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55639371 ~ 55663975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033995
taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTAAATGCGGGGGGATTAAATGGCTGGAATGCTGATGCTTGGTGGGAATTATTGGCTTTGCTTCAGCGGCCATTAGTTTTGGTTAATGATGTCCCGAGGACGAGACGCGTCAGATTGTTTACAGCACGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGATGCTCACTCGGACCATGGATGGACCAAAGGCGCGTGTGTCTGTTTCTTCTCTGGTACCTCACATTCAGAAGCAAGTGCATTTGGACATTCCTGCAGAAACTCTCGCAGCTGAGTaaacactgtacacacacacaatctcttcATTCACTTCGAcatccttcacacacacactccatcagATCTGCCTGTATAAACCAGTCTCAATCAAAACTCACAACACACTCCTGCACATGTGGATCTTGTTTAAATTTCAGACATCAGCTTTACAGTATTGATTACACTCGCGGATTGATTTTGGTATATTGTGTTTCTGGGTAAGAGTTAGTCGCATAAtgaaagtaatacattttattgCTTTATAAATGTCATTGTGctgggttattatttttaaagcaaacatttttgtgacttaaaataaacattaagtgGAA
>TCONS_00033996
taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGTGTGTGACTGTGGTTTTGTCGTGTTCATGCGATGGCGTGACTCCACAGAGGTCTGCGTGCCTGAAAGTTGCTCTTCGCTGTAGTGTCTCAGGAAGCCCGTTTGGCCCCATTTCCTGCACACACGCGGACAGATTCGCCAGGAATCGGAGAATGATTGCATTGAGGAGCCCGGCCTCCATGCTCACTCGGACCATGGATGGACCAAAGGCGCGTGTGTCTGTTTCTTCTCTGGTACCTCACATTCAGAAGCAAGTGCATTTGGACATTCCTGCAGAAACTCTCGCAGCTGAGTaaacactgtacacacacacaatctcttcATTCACTTCGAcatccttcacacacacactccatcagATCTGCCTGTATAAACCAGTCTCAATCAAAACTCACAACACACTCCTGCACATGTGGATCTTGTTTAAATTTCAGACATCAGCTTTACAGTATTGATTACACTCGCGGATTGATTTTGGTATATTGTGTTTCTGGGTAAGAGTTAGTCGCATAAtgaaagtaatacattttattgCTTTATAAATGTCATTGTGctgggttattatttttaaagcaaacatttttgtgacttaaaataaacattaagtgGAA
>TCONS_00033994
taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTAAATGCGGGGGGATTAAATGGCTGGAATGCTGATGCTTGGTGGGAATTATTGGCTTTGCTTCAGCGGCCATTAGTTTTGGTTAATGATGTCCCGAGGACGAGACGCGTCAGATTGTTTACAGCACGTGAGGCCGCCATTCAACACACTGACAGCCATAGAAAAACTCGACAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGATGCTCACTCGGACCATGGATGGACCAAAGGCGCGTGTGTCTGTTTCTTCTCTGGTACCTCACATTCAGAAGCAAGTGCATTTGGACATTCCTGCAGAAACTCTCGCAGCTGAGTaaacactgtacacacacacaatctcttcATTCACTTCGAcatccttcacacacacactccatcagATCTGCCTGTATAAACCAGTCTCAATCAAAACTCACAACACACTCCTGCACATGTGGATCTTGTTTAAATTTCAGACATCAGCTTTACAGTATTGATTACACTCGCGGATTGATTTTGGTATATTGTGTTTCTGGGTAAGAGTTAGTCGCATAAtgaaagtaatacattttattgCTTTATAAATGTCATTGTGctgggttattatttttaaagcaaacatttttgtgacttaaaataaacattaagtgGAA
>TCONS_00033420
GCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTAAATGCGGGGGGATTAAATGGCTGGAATGCTGATGCTTGGTGGGAATTATTGGCTTTGCTTCAGCGGCCATTAGTTTTGGTTAATGATGTCCCGAGGACGAGACGCGTCAGATTGTTTACAGCACGTGAGGCCGCCATTCAACACACTGACAGCCATAGAAAAACTCGACAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGAGTGTCTCAGGAAGCCCGTTTGGCCCCATTTCCTGCACACACGCGGACAGATTCGCCAGGAATCGGAGAATGATTGCATTGAGGAGCCCGGCCTCCGTAAGGAAAACACAAGACGGCTGAAAAATGAAAAACAGAGTCGGTCTGGCACGTGCGAGGAATTCAAAGGCCTGGACAAACTCCAGCTCTCGTTTCACTTTGCTAGAAATATTTGGGGACAGTTTTGGGAACAAACTGGCTTTTTTCCCTACTTTTCAATGCACCTGAGAGCTGCACTGCATGTAATTGCATATATAGACACAACGTCATGACAGAAATGTTGGATCTGATTATTAAGTGAGGTTTATTGTCTGCACATGCTTTGGAGTAGTGTTACATAATAAGCGTCAAATTGCATAATTGCATCTTTACTTGATAGCGTGTTGCTAATTATATAACACGTTTTGTTTATAAGAAGCACATGCATCCGCACAAAACATGATGACTGGCAAAACATGAGGATGTCATCAGCGCACGTGATGCAGAATTTTAGGGTTATTATTAGCATAAAAGCATTCTTGtcatttgaaattaaatgtaaataaaaaaaatgtttaatttttttttatttagtgtaaaacattttatataattgacaaaaacacaccaaactttgaattaaaataaaatattagtatGAAAATGATTACAAATCATAATTAAACTTAGTAAATGTATTTCAGTGATAATAAAATAGCTGCA
>TCONS_00033998
taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGTGTGTGACTGTGGTTTTGTCGTGTTCATGCGATGGCGTGACTCCACAGAGGTCTGCGTGCCTGAAAGTTGCTCTTCGCTGTAGTGTCTCAGGAAGCCCGTTTGGCCCCATTTCCTGCACACACGCGGACAGATTCGCCAGGAATCGGAGAATGATTGCATTGAGGAGCCCGGCCTCCGTAAGGAAAACACAAGACGGCTGAAAAATGAAAAACAGAGTCGGTCTGGCACGTGCGAGGAATTCAAAGGCCTGGACAAACTCCAGCTCTCGTTTCACTTTGCTAGAAATATTTGGGGACAGTTTTGGGAACAAACTGGCTTTTTTCCCTACTTTTCAATGCACCTGAGAGCTGCACTGCATGTAATTGCATATATAGACACAACGTCATGACAGAAATGTTGGATCTGATTATTAAGTGAGGTTTATTGTCTGCACATGCTTTGGAGTAGTGTTACATAATAAGCGTCAAATTGCATAATTGCATCTTTACTTGATAGCGTGTTGCTAATTATATAACACGTTTTGTTTATAAGAAGCACATGCATCCGCACAAAACATGATGACTGGCAAAACATGAGGATGTCATCAGCGCACGTGATGCAGAATTT
>TCONS_00033997
taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGAGTGTCTCAGGAAGCCCGTTTGGCCCCATTTCCTGCACACACGCGGACAGATTCGCCAGGAATCGGAGAATGATTGCATTGAGGAGCCCGGCCTCCGTAAGGAAAACACAAGACGGCTGAAAAATGAAAAACAGAGTCGGTCTGGCACGTGCGAGGAATTCAAAGGCCTGGACAAACTCCAGCTCTCGTTTCACTTTGCTAGAAATATTTGGGGACAGTTTTGGGAACAAACTGGCTTTTTTCCCTACTTTTCAATGCACCTGAGAGCTGCACTGCATGTAATTGCATATATAGACACAACGTCATGACAGAAATGTTGGATCTGATTATTAAGTGAGGTTTATTGTCTGCACATGCTTTGGAGTAGTGTTACATAATAAGCGTCAAATTGCATAATTGCATCTTTACTTGATAGCGTGTTGCTAATTATATAACACGTTTTGTTTATAAGAAGCACATGCATCCGCACAAAACATGATGACTGGCAAAACATGAGGATGTCATCAGCGCACGTGATGCAGAATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033995 False 1011 lncRNA 0.44 3 55639371 55663975
TCONS_00033996 False 1059 lncRNA 0.45 5 55639371 55663975
TCONS_00033994 False 1058 lncRNA 0.44 3 55639371 55663975
TCONS_00033420 False 1124 lncRNA 0.41 3 55644723 55663735
TCONS_00033998 False 1057 lncRNA 0.46 4 55644935 55663975
TCONS_00033997 True 976 lncRNA 0.45 3 55644935 55663975

Neighbor

gene id symbol gene type direction distance location
XLOC_016954 tpm4b coding downstream 301786 55300425 ~ 55337585 (-)
XLOC_016953 rab8a coding downstream 341296 55270566 ~ 55298075 (-)
XLOC_016952 NA coding downstream 414796 55215186 ~ 55224575 (-)
XLOC_016951 NA coding downstream 567827 55059826 ~ 55071544 (-)
XLOC_016950 NA coding downstream 654718 54983323 ~ 54984653 (-)
XLOC_016956 NA coding upstream 20693 55684668 ~ 55751698 (-)
XLOC_016957 EPS15L1 coding upstream 87991 55751966 ~ 55779927 (-)
XLOC_016958 calr3b coding upstream 119921 55783896 ~ 55797318 (-)
XLOC_016959 rx2 coding upstream 169450 55833425 ~ 55861351 (-)
XLOC_016960 cplx4c coding upstream 226698 55890673 ~ 56003820 (-)
XLOC_016948 NA non-coding downstream 851793 54783824 ~ 54787578 (-)
XLOC_016947 FQ378001.1 non-coding downstream 911945 54727306 ~ 54727426 (-)
XLOC_016962 CU013534.1 non-coding upstream 378537 56042512 ~ 56042630 (-)
XLOC_016963 NA non-coding upstream 396425 56060400 ~ 56095275 (-)
XLOC_016969 NA non-coding upstream 978163 56642138 ~ 56655769 (-)
XLOC_016971 NA non-coding upstream 1145317 56809292 ~ 56884888 (-)

Expression


Co-expression Network