XLOC_016958 (calr3b)


Basic Information

Item Value
gene id XLOC_016958
gene name calr3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55783896 ~ 55797318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033112
CCACGCGCTTTTCCCGAGCAACTGAGGAACCGAGGGCAGCAGAGCGCGAGAGCGAGCGTGCGGGagtcatttctttaaaaaaaattaattaacgaAGATGCAAATTTCATTATTACAGTTAATTTCGGCTGCATTATTGGCACTGGCAGCCAATGCAGAAGTGTACTTAAACGAGCAGTTTCTGGACGGAGATGCCTGGAGGAGTCGATGGGTTAATTCGGAGCACAAATCTGACTACGGGCAGTTTAAACTGACCGCTGGAAACTTCTACGGAGACGCTGAGAAAGATAAGGGCCTGCAGACCAGTCAAGATGCTCGTTTCTACGCCACCTCTGTCCGCTTCGAGCCCTTTAGCAATGAGGGCAAAACACTGGTGATCCAGTTTACGGTTAAACACGAGCAGAAGATCGACTGTGGAGGCGGATACGTTAAAGTCTTCCCAGCTGATCTCAACCAGGCGGACATGCACGGCGACTCCCAGTATTACATCATGTTTGGGCCTGATATCTGTGGCTACAGCACTAAAAAGGTTCACGTCATTTTTAACTATAAGGGACAGAACCACCTCATCAAGAAAGATATCAAATGCAAGgATGATGAACTGACTCACCTGTACACATTGATCTTGAATCCGGATCAGACATATGAGGTTAAGATTGATAATGAGAAGGTGGAGTCCGGCTCTCTGGAGGAGGACTGGGATTTCTTGCCCCCGAAGAAGATCAAGGACCCCGAAGCTAAAAAACCCGAGGACTGGGACGACCGGGCCAAGATTGATGACGAGACTGACACCAAACCTGAGGACTGGGATAAGCCCGAGAATATCCCCGATCCTGATGCTAAGAAGCCAGAAGACTGGGATGAGGACATGGATGGAGAGTGGGAGCCTGCCATGATCCCTAACCCCGAGTACAAGGGTGAGTGGAAACCCAAACAGATTGACAACCCGAACTACAAGGGCGCCTGGGTGCATCCTGAAATCGATAACCCAGAACACGTTCCTGATGACCAGATCTACAAATTCGACAATATTGGAGTCCTTGGGCTGGATCTCTGGCAGgtGAAGTCTGGCACCATTTTTGACAACTTCTTCATCTCAGATGATGTGAAAGAAGCTGAGGAATTTGGAAATGAAACGTGGGGCGCTACAAAGGGCCccgagaagaaaatgaaggaGGAACAGGAAGAGAAGAAACGCAAAGAGGAAGAGGAAAAGAACAAGGAGCAGAACACCGAAGCAGCAGATGAGGAAGAGGAAGACGAaggagaggaggaagaggaagaagacGAGACTGAAGAGCCTCAGGAGGACGAAGGAGACGAGGATGTGCTTCAGAAAGACGAACTGTAAAGCAGAAATCCATTTTTGTCCATATTCCACATTATACCAGGGACGCGACTGCAGTGCATTCATTCAAAACAACACATTCAGACTGAATGGGAACCAATGGAGGTTCTCAGACCACGCGTTCAATCAGTGAGCTTTGACCCCTAAATAGCCATTTAAAGAGacggttcacccaaaaactgaaacttgtcattatttattcatcctccatttgttccaaaccaacgtttctttcctctgttgaacacaaaataagatattctgtgttatattttattgtaattagtagcatagtattttttttatgctactatggaagtcaatgggtcccagcaaccagcattctacaaaatatcttcctttgtgttcaactgaagacaGAAACTCTTAAAcgtttagatttttgggtgaactgtcccccTAAATaccttattttgtttgtttatttagaagaTCTCAGCCCATGCATTTAATTAGTGATCTTTGACCCCTAAATGGCCAGTTAAAAAGACAGTTAacctaaaaaatttaattctctctttcatttattcatcaatgacttgttccaaaccggtttgagtttctttcttctgttgaacacacaataaGATATGCTGAagaatactgtattttattatgaTTGGTAATATGAATTAGTAgcaaaactatggaagtcaatgggtcccagaaaccagcattctttaaactattttcctttgtgttcaaccgagtaaagaaactcaaagtttagaaccacttgagtgagtggtgattttgggtgaactgtccccttaaataccttgtttttgtttgtttgtttgtttgtttgtttggtagtTTTCAGCTCATGCATTACATAGTTAGTGACATTTGACCCCTAAATAGCCAGTTAAAGAGACcgttcagccaaaaaaaaaaaaatgaagtccttcgcttgtttcaaacctgttcgagtttctttcttctgttgaacacaaaggaagatattctgaagaatgctggtaaaaacaaacattgacttgcattgcattttttttgcTCCTCCTATGGATGTTAATTCTTTGAGCATTCTTTGAAgtgtcttttttttgtgtttttatagaacaaaaaaaataagtttagaaTCATTTGAATTGGTAAATGTTCTTTTTTAATGTGAATTGTCCCTTTAAATAtcatcttttatttgtttgtttgtttttgagtgtTTCTTTATGGTACCGGGGTCCGACATGTGAAACACCTTTAAAGAACTGGTCTATGATCAGTTTATTGTGCCTTTTGTGTATGCAAAATTGTTGTTTCTGTTAGTTTGAAGGAATTGGATTAAGTTAGATTAACAGTCTGTATCAGGAAGCCGGATTAGCTTTATAGGCAGttatgttttagtttagtttgcaccaattcTGCATTTTGTAGCTCAGCTTCTACATAATACCATGGCACATAATGACTTTacctgtttgttcaaactacttatttatgaCGAGTCGAACCAacacagtttttaactttttttttttttttttggccaacttaattgttttatgttcattcaacttaaattta

Function

symbol description
calr3b Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axis; digestive system; ectoderm; and hatching gland. Orthologous to human CALR3 (calreticulin 3).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9907 Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axis; digestive system; ectoderm; and hatching gland. Orthologous to human CALR3 (calreticulin 3).

Ensembl:

ensembl_id ENSDARG00000102808

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033112 True 2917 mRNA 0.41 9 55783896 55797318

Neighbor

gene id symbol gene type direction distance location
XLOC_016957 EPS15L1 coding downstream 3969 55751966 ~ 55779927 (-)
XLOC_016956 NA coding downstream 32198 55684668 ~ 55751698 (-)
XLOC_016955 NA coding downstream 119921 55639371 ~ 55663975 (-)
XLOC_016954 tpm4b coding downstream 446311 55300425 ~ 55337585 (-)
XLOC_016953 rab8a coding downstream 485821 55270566 ~ 55298075 (-)
XLOC_016959 rx2 coding upstream 36107 55833425 ~ 55861351 (-)
XLOC_016960 cplx4c coding upstream 93355 55890673 ~ 56003820 (-)
XLOC_016961 CU013534.2 coding upstream 182909 55980227 ~ 56002115 (-)
XLOC_016962 CU013534.1 coding upstream 245194 56042512 ~ 56042630 (-)
XLOC_016963 NA coding upstream 263082 56060400 ~ 56095275 (-)
XLOC_016952 NA non-coding downstream 559321 55215186 ~ 55224575 (-)
XLOC_016951 NA non-coding downstream 712352 55059826 ~ 55071544 (-)
XLOC_016950 NA non-coding downstream 799243 54983323 ~ 54984653 (-)
XLOC_016969 NA non-coding upstream 844820 56642138 ~ 56655769 (-)
XLOC_016971 NA non-coding upstream 1011974 56809292 ~ 56884888 (-)
XLOC_016972 NA non-coding upstream 1255701 57053019 ~ 57061935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01046994_00002131_00002800 CALR3, CALR, CALR3A, CRT, CALR3B coding CI01046994 null 2131 ~ 2800 (-)
bowfin (Amia calva) AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding CM030142.1 CM030142.1 14173845 ~ 14179120 (-)