Fish Transcriptome and Expression Database

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model fish

XLOC_016962 (CU013534.1)

Basic Information

Item	Value
gene id	XLOC_016962
gene name	CU013534.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	56042512 ~ 56042630 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033120
cccgggttggccatatcaccctgcagcccaacacTGATTACTCACTacagctaagcagggctgagcctggtcagaatGTGTATGGGAAACCACCTGGGAAAGCtcggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000104019

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00033120	True	119	rRNA	0.56	1	56042512	56042630

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_016960	cplx4c	coding	downstream	38692	55890673 ~ 56003820 (-)
XLOC_016961	CU013534.2	coding	downstream	40397	55980227 ~ 56002115 (-)
XLOC_016959	rx2	coding	downstream	181161	55833425 ~ 55861351 (-)
XLOC_016958	calr3b	coding	downstream	245194	55783896 ~ 55797318 (-)
XLOC_016957	EPS15L1	coding	downstream	262585	55751966 ~ 55779927 (-)
XLOC_016963	NA	coding	upstream	17770	56060400 ~ 56095275 (-)
XLOC_016964	jund	coding	upstream	82544	56125174 ~ 56131312 (-)
XLOC_016965	uba52	coding	upstream	296428	56339058 ~ 56348727 (-)
XLOC_016966	cers4b	coding	upstream	314022	56356652 ~ 56387041 (-)
XLOC_016967	ctxn1	coding	upstream	388217	56430847 ~ 56431298 (-)
XLOC_016956	NA	non-coding	downstream	290814	55684668 ~ 55751698 (-)
XLOC_016955	NA	non-coding	downstream	378537	55639371 ~ 55663975 (-)
XLOC_016952	NA	non-coding	downstream	817937	55215186 ~ 55224575 (-)
XLOC_016951	NA	non-coding	downstream	970968	55059826 ~ 55071544 (-)
XLOC_016950	NA	non-coding	downstream	1057859	54983323 ~ 54984653 (-)
XLOC_016969	NA	non-coding	upstream	599508	56642138 ~ 56655769 (-)
XLOC_016971	NA	non-coding	upstream	766662	56809292 ~ 56884888 (-)
XLOC_016972	NA	non-coding	upstream	1010389	57053019 ~ 57061935 (-)
XLOC_016974	dre-mir-7148	non-coding	upstream	1060771	57103401 ~ 57103485 (-)

Expression

Co-expression Network