XLOC_016966 (cers4b)


Basic Information

Item Value
gene id XLOC_016966
gene name cers4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56356652 ~ 56387041 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033125
atgctggaaaaCCGGTGGTTCTGGAAGCAGGAGATCTGGCTTCCCCCAGGAATCGTCTGGGAGGATCTGGAGGAGATGCAGGGCTCTCGGCGTCCAATGCCCAGAGATCTGCTCCTCGCTCTGCCTCTCGCTCTGGCCTTCATCATGCTGCGCTACGCTTTTGAGAGGCGTGTGGCGTTTCCTCTCAGCCGAGTTTTAGGAGTCAAAGATCCAGTTCGCCTGAAAGTCACTCCATCTCCCAGTCTGGAGGCGTTTTACACTAAAAACAGCAGGCAGCCCACACAGATTGAGATCAGCGGGCTGGTAAAGCAGTGCGGTCTGACTCACAGACAGGTGGAGACTTGGTTTCGAAACCGCAGAAATCTGGACAGACCCAGCAATACAACAAAGTTCTGTGAGACGGCCTGGTTCTGGGATCAGAGAGAGTGCTGGAGAGGGTTTCCTCGACAGcctCTGCAGGAGCTTCATTACTGGTACTACATGCTGGAGTTGTCCTTCTACTGGTCTCTGCTGCTCTGTGTGTCTGTGGACGTCAAGCGAAAAGACTTTAAAGAGCAGATCATCCACCACTTTGCCACAATTTTCCTGCTGGGTTTCTCGTATTGTTCGAACTACATCCGCATCGGGACACTAGTGATGCTCGTCCACGATGCCTCCGACTTTCTGCTGGAGTCTGCCAAGATGTTTAACTACGCCGGCTGGAAGAAAACCTGCGACTCCTTATTTGTGATCTTCGCTGCTGTTTTCCTGGTGACTCGACTGCTGGTGTTTCCTAGCAAGATCATCTACACCACTCTGGTTTTGTCGATGGAGGTGTTTGAGCCGTTTCTGGGTTATTATTTCTTCAATGCGTTGCTGTTGGTGCTGCAGGCGCTGCACATTTACTGGGCTTACTTAATCCTCAGGATGGTCTACAAGTTCCTCTTCTTGGGGAAACTGGACAAAGACGAGCGCAGTGATGTGGAAACTGAGccagaagaggaagaagaagaggaaaaagaggaagaagaggaagagcagaggagctggaggaagaggAAGGTGGTGCTGGACTCCCGCCGGGCCATGCTGAGCTCCAGCTGCGTTCTCAATAACCTCACCCAGCAGAAAGCAGACGCTCAAAGACGACCCAAAGCCAGATAG
>TCONS_00033126
GATGGATGCGCTCAGCCGGTGGTTCTGGAAGCAGGAGATCTGGCTTCCCCCAGGAATCGTCTGGGAGGATCTGGAGGAGATGCAGGGCTCTCGGCGTCCAATGCCCAGAGATCTGCTCCTCGCTCTGCCTCTCGCTCTGGCCTTCATCATGCTGCGCTACGCTTTTGAGAGGCGTGTGGCGTTTCCTCTCAGCCGAGTTTTAGGAGTCAAAGATCCAGTTCGCCTGAAAGTCACTCCATCTCCCAGTCTGGAGGCGTTTTACACTAAAAACAGCAGGCAGCCCACACAGATTGAGATCAGCGGGCTGGTAAAGCAGTGCGGTCTGACTCACAGACAGGTGGAGACTTGGTTTCGAAACCGCAGAAATCTGGACAGACCCAGCAATACAACAAAGTTCTGTGAGGCCTGCTGGAGGTTTGCCTTCTACCTGGTGGCCTTCACCGCGGGACTGCTGTCTTTAATTAACACGGCCTGGTTCTGGGATCAGAGAGAGTGCTGGAGAGGGTTTCCTCGACAGcctCTGCAGGAGCTTCATTACTGGTACTACATGCTGGAGTTGTCCTTCTACTGGTCTCTGCTGCTCTGTGTGTCTGTGGACGTCAAGCGAAAAGACTTTAAAGAGCAGATCATCCACCACTTTGCCACAATTTTCCTGCTGGGTTTCTCGTATTGTTCGAACTACATCCGCATCGGGACACTAGTGATGCTCGTCCACGATGCCTCCGACTTTCTGCTGG

Function

symbol description
cers4b Predicted to enable DNA binding activity and transferase activity. Predicted to be involved in sphingolipid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Is expressed in brain; digestive system; myotome; and pectoral fin. Orthologous to human CERS4 (ceramide synthase 4).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110719-2 Predicted to enable DNA binding activity and transferase activity. Predicted to be involved in sphingolipid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Is expressed in brain; digestive system; myotome; and pectoral fin. Orthologous to human CERS4 (ceramide synthase 4).

Ensembl:

ensembl_id ENSDARG00000018619

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033125 False 1143 mRNA 0.52 10 56356652 56387041
TCONS_00033126 True 737 mRNA 0.54 7 56361393 56385373

Neighbor

gene id symbol gene type direction distance location
XLOC_016965 uba52 coding downstream 7925 56339058 ~ 56348727 (-)
XLOC_016964 jund coding downstream 225340 56125174 ~ 56131312 (-)
XLOC_016963 NA coding downstream 261377 56060400 ~ 56095275 (-)
XLOC_016962 CU013534.1 coding downstream 314022 56042512 ~ 56042630 (-)
XLOC_016960 cplx4c coding downstream 352832 55890673 ~ 56003820 (-)
XLOC_016967 ctxn1 coding upstream 43806 56430847 ~ 56431298 (-)
XLOC_016968 pip5k1cb coding upstream 121410 56508451 ~ 56635782 (-)
XLOC_016969 NA coding upstream 255097 56642138 ~ 56655769 (-)
XLOC_016970 arhgap45a coding upstream 292173 56679214 ~ 56757069 (-)
XLOC_016971 NA coding upstream 422251 56809292 ~ 56884888 (-)
XLOC_016956 NA non-coding downstream 604954 55684668 ~ 55751698 (-)
XLOC_016955 NA non-coding downstream 692677 55639371 ~ 55663975 (-)
XLOC_016952 NA non-coding downstream 1132077 55215186 ~ 55224575 (-)
XLOC_016972 NA non-coding upstream 665978 57053019 ~ 57061935 (-)
XLOC_016974 dre-mir-7148 non-coding upstream 716360 57103401 ~ 57103485 (-)
XLOC_016976 NA non-coding upstream 815970 57203011 ~ 57204446 (-)

Expression


Co-expression Network