XLOC_016976


Basic Information

Item Value
gene id XLOC_016976
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57203011 ~ 57204446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034001
aatataatattgatatattgttaaaatattgcattgtgtaataaatattttggttttagctTTTAACTTGGTTGAATCAATTTGATGttcaaaaataaaactgttttttatttaatacattaatagtatatttataaatatcgATATAGTTTGTTATTGTTCAAATATTCCCATTGTTCAATACACATTTTGGTTTTAGTACAACTCCTGAGGATTCGTTTCGACgaatattgtgaaaaataataTTGTTCACATTAATAAATATCTATATGGTAAGTTAGTgttcaaatattaatatttttttaatgcccagttttgttttaggacaactttgatgaaacgTTTTGATTCACGTCAGATGTTGActactatataaacacacacccaTTACATGTATATGcattatataaatacaaacttttattttgtatgcgaTTTAATCAGGATTAACTGTTTGTaagcactaataataataataataataataattcatactCATGTTATTAGGGCTCATCTTTACACTGACTGTTAACGGTAAGATGCTCATGATGGACTAAATGCATCTCTTCATTTCTTCTCTATATATTTTTGGGTTTTAAATCTTGCCAAACAAGCACTTCGCAGTGTGCTTTACGTTAAGCTCATTACGCCTGGAGAATGAGGATgcaatgaatgattgaaatgcaAAGTGCAGTAATTGTAGTATTTGTGGTGTTTTTTTGGACTGGGAATGAAATGAAGTGGAGCTTTTGTGCGAGCGCAGAGCAGGCGTCTTGTTTTGTGCCAAGGCCTCATCAAATGCAGCACTTCACTGAACTGATTCAGGATCAGTATTTATTTACAGGATAAACCTCAGCTCTCGTGCATGTGGGCCGTCTGATTGAACTAATGTTGGTTTGTTGACTGGACACGAGTCGATTAGCAGGGTCTGTGTATGACTACTCGTGTACAATAAAATCGAATCATTCTTTGTGTATCGATGTTTCTGTTTGCTTTCAGCACGTCAGACTGGATTGAAGACACAATTGTTAGCCCTactttctgtttaaaggagagaagagtgttttcaaaacatttgcaatcataatagttttaataactgatgtctaataaataatttcttatctttgccatgaagacagcacatattttacaataaacagttgaagtctgaattattagcccc

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:1902600 proton transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006812 cation transport biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034001 True 1186 lncRNA 0.32 2 57203011 57204446

Neighbor

gene id symbol gene type direction distance location
XLOC_016975 ARMC6 coding downstream 59534 57121596 ~ 57143477 (-)
XLOC_016973 slc25a42 coding downstream 92534 57076079 ~ 57110477 (-)
XLOC_016974 dre-mir-7148 coding downstream 99526 57103401 ~ 57103485 (-)
XLOC_016972 NA coding downstream 141076 57053019 ~ 57061935 (-)
XLOC_016971 NA coding downstream 318123 56809292 ~ 56884888 (-)
XLOC_016977 btbd2b coding upstream 1802 57206248 ~ 57227542 (-)
XLOC_016978 mbd3a coding upstream 35532 57239978 ~ 57264334 (-)
XLOC_016979 si:ch1073-325m22.2 coding upstream 64335 57268781 ~ 57287258 (-)
XLOC_016980 tcf3a coding upstream 106077 57310523 ~ 57379216 (-)
XLOC_016981 NA coding upstream 196550 57400996 ~ 57405728 (-)
XLOC_016969 NA non-coding downstream 547242 56642138 ~ 56655769 (-)
XLOC_016963 NA non-coding downstream 1107736 56060400 ~ 56095275 (-)
XLOC_016983 NA non-coding upstream 229549 57433995 ~ 57434621 (-)
XLOC_016985 NA non-coding upstream 286421 57490867 ~ 57580290 (-)
XLOC_016986 NA non-coding upstream 377225 57581671 ~ 57586197 (-)

Expression


Co-expression Network