XLOC_016983


Basic Information

Item Value
gene id XLOC_016983
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57433995 ~ 57434621 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033429
ACATGTACTTTAAACAAAGCAGTGTCATTCATTTGAATACAATAAGTACACTaggttttattttactgtaacaaCAGCTTAAATAgtgtttaataattatttgtaatttaagCTGTATGAAGTTTAGCTAGCGGTCCACAGCAGGACTGAGATCTAATTGCTCTAATGaaggctttgttttggtctattgaaaaatctgttatagtttctcaaaatagcaacgcaccagcaatgcgcctcaacacgcctccctttttagaccagaacgcctatgggcgcacatatgagcgcaaatgcatttgctatttaaacagcgtggcgcaaaacattaaaacaactcttgcgccaagctgaaactagcaaacaatacTTGcgttgcgccacattgcgccgggtgtatgatagggccctacgtctgtaaaataaacgattaaaagtgctgatgattgtgatagtaagtgttgcattgtcgtctttcaggttgtatctcagctttaatgcacatttttaaatacataactaaacaaagcagctgcttgccgtcgcgacagcaataagatccaacgGGGCTGTttctgggcgctgctgttgcaatggaacgatCTGTTGAGTGTTGAATTTTATTCC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006310 DNA recombination biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0051052 regulation of DNA metabolic process biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033429 True 627 lncRNA 0.40 1 57433995 57434621

Neighbor

gene id symbol gene type direction distance location
XLOC_016981 NA coding downstream 28267 57400996 ~ 57405728 (-)
XLOC_016980 tcf3a coding downstream 54779 57310523 ~ 57379216 (-)
XLOC_016979 si:ch1073-325m22.2 coding downstream 146737 57268781 ~ 57287258 (-)
XLOC_016978 mbd3a coding downstream 169661 57239978 ~ 57264334 (-)
XLOC_016977 btbd2b coding downstream 206453 57206248 ~ 57227542 (-)
XLOC_016984 pias4b coding upstream 12484 57447105 ~ 57473991 (-)
XLOC_016985 NA coding upstream 56246 57490867 ~ 57580290 (-)
XLOC_016986 NA coding upstream 147050 57581671 ~ 57586197 (-)
XLOC_016987 CABZ01060891.1 coding upstream 174670 57609291 ~ 57707039 (-)
XLOC_016988 NA coding upstream 295715 57730336 ~ 57752904 (-)
XLOC_016976 NA non-coding downstream 229549 57203011 ~ 57204446 (-)
XLOC_016974 dre-mir-7148 non-coding downstream 330510 57103401 ~ 57103485 (-)
XLOC_016972 NA non-coding downstream 372060 57053019 ~ 57061935 (-)
XLOC_016989 NA non-coding upstream 367033 57801654 ~ 57811814 (-)
XLOC_016997 NA non-coding upstream 655700 58090321 ~ 58109574 (-)

Expression


Co-expression Network