XLOC_017038 (lrfn2b)


Basic Information

Item Value
gene id XLOC_017038
gene name lrfn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25370 ~ 76300 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034031
gtgtgcatccacaacAGACGGGATCTGCAGTGTTGAGTCTGGATCATAGCTGCTATATGTCAGAGCCACAAGAGCTTgctggagctatcagtcctttaggggaggggctatcagtcctttagggaggagctattagtcatttagggaggagctatcaatcctttagggaggagctatcagtttgttagggaggagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcagtcctttagggaggagctatcaatcCTTTTGGGAGGAGCTACCAGTCTTTTAGGGAGGCTCAAAGGACCATGACCATGagtctaaaggactgatagctccattATTAGGGAGGTTGtggtatttgattaaatattgtgAGGGCAAATTAATGCTTACATTACAATGAAATGCACAgatatattgtttataataattaataataataattgcagaaTGTTCACTTCAGTTTCTGCTCACAGTCACCATTAGATGAAAGCAGTGTCACAGGGAAAGGTGAACAGACAAAAGCTGCATTTACTGCTGTTAGTTAAACCCAGCTCAGAGACACGGCCAATACTGTTTCTATATCAGTTTTATAGTCTAGGTGTTTAAGGACTtatgtttattctttatttattatgtttattaatattacttagaaatgtgaaaatgtaATCCTGTAATTAGCCGTGTTCATTCTTTTAactgcataaattaaataattttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagactgattAATGATTAATTAACCTTCACAACCACTGAAAGTGATGAGTTGTAAATTGGTTGTCGTTTAGTTGTGGGGTCAGTGGCTGGATTAGTGTATCAGCACCACCAataatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgagtgtGTGCAGTCTCCGCTTCTGCGCCGGTTCTCAGCTTCCGGCTGCATTTCAGCCCGTTTATCAGAAAAACACGGCGCGCTCGTGCACGTGCATTTGATGTGAACGTGAGCGCGCGCGGCTCGGCCAGTCGCGGTGTGTCGGTGTGGATGGACTTTCAGCAGTGGGGATGTAATAAATGCTCATTAAACGACATCGATGGACGGATCGCGACTCGACGAGCCACACCAAAGGTGTGTGTCGCCACCTTCAGCCTCTGGTGGGCGGAGCCTGACGCTTGATTGACAGGCCTGTCCAGGTGAGGAACCTATGGCAGAGCAGCAGCGTGATACAGGTCCCTCAGTGTGAATCTACCATGGACCACGGGCTCTGTCAGATGCTGGTCCTAGGTATGGTTGCCGTGATGGCCCGAGCGTGCCCCAAGTACTGTGCATGCCAGAACCTGTCTGAGTCTCTGGGTACCCTGTGCCCGGCCAAAGGCCTGCTCTTCGTGCCGTCTGATATAGATCGCAGTACCGTGGAGCTCCGGCTGGGTGGAAACTTCATCCTGCGAATCACACAGCAGGACTTTGCCAACATGACAGACCTAGTGGACCTTACGCTCTCTCGCAACACCATCAGCTACATTCAGCCCTTCTCATTCGGGGACCTGGAGACTCTCCGCTCTCTCCATATGGATAACAACCGTTTAACGGAGCTGGGTCCAGATGACCTGCGAGGACTGATCAGCCTGCAGCACCTCATCCTCAACAACAACCAGCTGAGCCGCGTCTCTGAGCGGGCGTTTGAAGACCTTGCAGCCACGCTGGAGGATCTGGACCTGTCCTACAACAACCTTCAGGCTCTGCCCTGGCACTCAGTGCGGCAGATGATCAACCTGCACCAGCTGAGTCTGGACCACAATTTGCTGGACTACATTCCTGAGGGCACTTTCGTGGATCTGGAAAGACTGGCCCGTTTAGACCTCACCTCTAACCGTCTGCAGAAGCTCCCACCGGATCCTATTTTCGCCAGAGCGCAGGACTCAGAGGTGATGACCACACCGTTCGCTCCTCAGCTCTCACTCAGCATTGGAGGAAATCCACTGCACTGCAACTGCGAACTGCTGTGGTTCCGCCGTCTGGAGAGAGACGATGACCTGGAGACCTGCGCCTCGCCTCCTGGCCTAAAGGGTCGCTATTTCTGGAACGTTCGGGAGCATGAGTTTCTGTGCGAGCAGCCACTGATTACACAACACACCCACAAGTTACTGGCTCTGGAGGGACAGACTGCCAGCCTGCGGTGCGATGCCATCGGAGATCCCATCCCTACCATACACTGGGTCACCCCTGAAGATCGATTGCTGGGAAACTCTTCTCGCACAGTTGTGTACCGCAACGGGACCCTGGAGATCCTGATCACCACGTCAAAGGACTCCGGGACCTTCACTTGCATTGCAGCCAACCTGGCTGGCGAATCAACAGCTTCCGTGGAGCTGTCAATTATTCAGCTGCCTCACATAAGCAACGGCACAGGACAGGCATCGCAACCCAAGTCCCGCCTGTCAGACATTACAGGCGGCTCCAGGACCAACAAAGGCATTCCCAAGGGTCAACCAGAGAAAGCGGTGTCTGTGTCAGAGGTGACTGCAGTGGCGGCGCTGGTCAGGTGGACTGTCGGCAAGACTGCTCCCAAAGTCAAGATGTTCCAGCTCCAGTACAACTGCTCAGATGATGAGGTGCTCATCTACAGGATGATCCCTTCATCCAGTAAGGCCTTCCACATCACCAACCTGGTGTCTGGGACTCGCTATGACCTGTGTGTGCTGGCGGCCTGGGAGGACTCCGCCACCACCCTCACTGCCACTAATGTGGTGGGCTGCGTGGAGTTCTACACCCGCGACGACTACACTCAATGCCAGTCTCTTCAGGGGCAGCTGCTGGGCGGCACCATGATCCTGGTGGTGGGGGGAGTGATCGTGGCCACGCTGCTGGTGTTCATCGTCATCCTGATGGTGCGCTATAAGGCGGGGGACGGTGGAGGCGACGCTCCTGTCAGCAAGCTGAGCGACAGCAGTGAAACATACTCTCAGACCAACGGAGGGAGGCTGGGGCAGAATGGGGTGCCTCTGCCGGGGCCAAAAGAAAAGTCTACGGTCACCATGCGGGACGAAGTGGTCAAATTCAAGTGCGGTTCTCTCCAGAGCAGCtcgtcctcctcctcttcctcctcaggGTCAGCAGATGCCACTTCCTACAGCCCCAACAGTGCCCTCGCCAACATCTTGAGGTCCGCACCTCCAAAGCAGCACAACAACATAGACCAGCTCCTAGGCGCCTTCACATCGCTGGAGCTTCGGGGCCAGAGCAAGGACCTGTGTCTGTCTGGCACCCCGTCGAGTGCAGCTGCTCCTGCTGTGTCCCCGGCAGGTCCTGCTGATAAGGAGCCGCTGCTGGGCCGGACGCTGGACTCTCGGCTCAGCAAACTGCTCATGCTGCCGCTGGACTCCAAACCCAAGAGGAGCCATTCCTTTGACATGGGCGACTTTACGGTGCCCACGGCGCAGCAGCTGCGCTCTTACCCACGCCGCTTCAGCAGCATCTGGACCAAACGCAGCCTGTCGGTTAACGGGACACTGCTGCCGTGCGACGAGGAAGCGGACAGCAACGGGAGCAAGGGGACGATCGAGAGCCCCGAGTGGGTTATGGAGAGCACAGTATAGAACACAGGGATAGATGGACACCTTTGACTGAACTGTTATTTACTCCATCCTGCATGACTCTGGTGaagtttcatttaattattacagtTGTACGCCTTGCCATATCCAGAACAGGTATGAAGTCAGCGTCATTCAGGGGACGTGTTCACAAAGCAGACGCACCACTCTACAAACCTGTCGGGTTTCAGCACAGTTTCCTAGTGCTTACTGTACATTATCACTAAGGTTCCCTGTCGAAGTCACTGCCGCGTCAGACACTTGCTGAAGGGGGGTTTGTGTTGCAGAGATGAGCTTCTGCTTTGGGGTACAGTGACAGCTCTTTCCCACTGAGCGGTGTGCTGCGGTATAGTACAGTAT
>TCONS_00034032
ATGGACCACGGGCTCTGTCAGATGCTGGTCCTAGGTATGGTTGCCGTGATGGCCCGAGCGTGCCCCAAGTACTGTGCATGCCAGAACCTGTCTGAGTCTCTGGGTACCCTGTGCCCGGCCAAAGGCCTGCTCTTCGTGCCGTCTGATATAGATCGCAGTACCGTGGAGCTCCGGCTGGGTGGAAACTTCATCCTGCGAATCACACAGCAGGACTTTGCCAACATGACAGACCTAGTGGACCTTACGCTCTCTCGCAACACCATCAGCTACATTCAGCCCTTCTCATTCGGGGACCTGGAGACTCTCCGCTCTCTCCATATGGATAACAACCGTTTAACGGAGCTGGGTCCAGATGACCTGCGAGGACTGATCAGCCTGCAGCACCTCATCCTCAACAACAACCAGCTGAGCCGCGTCTCTGAGCGGGCGTTTGAAGACCTTGCAGCCACGCTGGAGGATCTGGACCTGTCCTACAACAACCTTCAGGCTCTGCCCTGGCACTCAGTGCGGCAGATGATCAACCTGCACCAGCTGAGTCTGGACCACAATTTGCTGGACTACATTCCTGAGGGCACTTTCGTGGATCTGGAAAGACTGGCCCGTTTAGACCTCACCTCTAACCGTCTGCAGAAGCTCCCACCGGATCCTATTTTCGCCAGAGCGCAGGACTCAGAGGTGATGACCACACCGTTCGCTCCTCAGCTCTCACTCAGCATTGGAGGAAATCCACTGCACTGCAACTGCGAACTGCTGTGGTTCCGCCGTCTGGAGAGAGACGATGACCTGGAGACCTGCGCCTCGCCTCCTGGCCTAAAGGGTCGCTATTTCTGGAACGTTCGGGAGCATGAGTTTCTGTGCGAGCAGCCACTGATTACACAACACACCCACAAGTTACTGGCTCTGGAGGGACAGACTGCCAGCCTGCGGTGCGATGCCATCGGAGATCCCATCCCTACCATACACTGGGTCACCCCTGAAGATCGATTGCTGGGAAACTCTTCTCGCACAGTTGTGTACCGCAACGGGACCCTGGAGATCCTGATCACCACGTCAAAGGACTCCGGGACCTTCACTTGCATTGCAGCCAACCTGGCTGGCGAATCAACAGCTTCCGTGGAGCTGTCAATTATTCAGCTGCCTCACATAAGCAACGGCACAGGACAGGCATCGCAACCCAAGTCCCGCCTGTCAGACATTACAGGCGGCTCCAGGACCAACAAAGGCATTCCCAAGGGTCAACCAGAGAAAGCGGTGTCTGTGTCAGAGGTGACTGCAGTGGCGGCGCTGGTCAGGTGGACTGTCGGCAAGACTGCTCCCAAAGTCAAGATGTTCCAGCTCCAGTACAACTGCTCAGATGATGAGGTGCTCATCTACAGGATGATCCCTTCATCCAGTAAGGCCTTCCACATCACCAACCTGGTGTCTGGGACTCGCTATGACCTGTGTGTGCTGGCGGCCTGGGAGGACTCCGCCACCACCCTCACTGCCACTAATGTGGTGGGCTGCGTGGAGTTCTACACCCGCGACGACTACACTCAATGCCAGTCTCTTCAGGGGCAGCTGCTGGGCGGCACCATGATCCTGGTGGTGGGGGGAGTGATCGTGGCCACGCTGCTGGTGTTCATCGTCATCCTGATGGTGCGCTATAAGGCGGGGGACGGTGGAGGCGACGCTCCTGTCAGCAAGCTGAGCGACAGCAGTGAAACATACTCTCAGACCAACGGAGGGAGGCTGGGGCAGAATGGGGTGCCTCTGCCGGGGCCAAAAGAAAAGTCTACGGTCACCATGCGGGACGAAGTGGTCAAATTCAAGTGCGGTTCTCTCCAGAGCAGCtcgtcctcctcctcttcctcctcaggGTCAGCAGATGCCACTTCCTACAGCCCCAACAGTGCCCTCGCCAACATCTTGAGGTCCGCACCTCCAAAGCAGCACAACAACATAGACCAGCTCCTAGGCGCCTTCACATCGCTGGAGCTTCGGGGCCAGAGCAAGGACCTGTGTCTGTCTGGCACCCCGTCGAGTGCAGCTGCTCCTGCTGTGTCCCCGGCAGGTCCTGCTGATAAGGAGCCGCTGCTGGGCCGGACGCTGGACTCTCGGCTCAGCAAACTGCTCATGCTGCCGCTGGACTCCAAACCCAAGAGGAGCCATTCCTTTGACATGGGCGACTTTACGGTGCCCACGGCGCAGCAGCTGCGCTCTTACCCACGCCGCTTCAGCAGCATCTGGACCAAACGCAGCCTGTCGGTTAACGGGACACTGCTGCCGTGCGACGAGGAAGCGGACAGCAACGGGAGCAAGGGGACGATCGAGAGCCCCGAGTGGGTTATGGAGAGCACAGTATAG

Function

symbol description
lrfn2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of postsynaptic density membrane. Orthologous to human LRFN2 (leucine rich repeat and fibronectin type III domain containing 2).

GO:

id name namespace
GO:0099061 integral component of postsynaptic density membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-111 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of postsynaptic density membrane. Orthologous to human LRFN2 (leucine rich repeat and fibronectin type III domain containing 2).

Ensembl:

ensembl_id ENSDARG00000077489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034031 False 4026 mRNA 0.53 4 25370 76300
TCONS_00034032 True 2346 mRNA 0.58 2 66857 75943

Neighbor

gene id symbol gene type direction distance location
XLOC_017037 si:ch73-57f22.2 coding upstream 2510 17667 ~ 22860 (+)
XLOC_017039 zgc:112001 coding downstream 11868 88168 ~ 90255 (+)
XLOC_017040 olfcb1 coding downstream 21879 98179 ~ 106012 (+)
XLOC_017041 pcare2 coding downstream 30181 106481 ~ 113317 (+)
XLOC_017042 BX511077.1 coding downstream 95862 172162 ~ 187142 (+)
XLOC_017043 cx28.8 coding downstream 113728 190028 ~ 194622 (+)
XLOC_017056 NA non-coding downstream 605547 681847 ~ 682292 (+)
XLOC_017061 NA non-coding downstream 820605 896905 ~ 900380 (+)
XLOC_017065 NA non-coding downstream 1123992 1200292 ~ 1203874 (+)
XLOC_017070 NA non-coding downstream 1278363 1354663 ~ 1355683 (+)
XLOC_017074 NA non-coding downstream 1587459 1663759 ~ 1725048 (+)

Expression


Co-expression Network