XLOC_017043 (cx28.8)


Basic Information

Item Value
gene id XLOC_017043
gene name cx28.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 190028 ~ 194622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034037
AAATGACACAAAACCACAGGAGTGAACATCAGGTGAGAAGCTCActgatacacacgcacacacacagacttcaTCATCCCACTGCTGTTCATCTGCACAGGAGCTCCAGGAGGAGGACTGAACACCTGAACATGTGCTGATGAAGACACGCTGCTGAAAACACCGCTGTGTGAATCATGAACTGGGGTTTCCTGGAGAACGTGTTGAGCGGGGTGAACCGCTACTCCACCGTGGTGGGCCGGGTCTGGCTCTCCATCCTCTTCATCTTCCGCATCCTGGTGTTCGTGGCGGCCGCCGAGCAGGTGTGGAAGGACGAGTTCAAGGACTTCGTCTGCAACACGCAGCAGCCGGGCTGCGAGCAGGTGTGCTTCGACCACTTCTTCCCCATCTCTCAGGTGCGTCTGTGGGCGCTGCAGCTCATCATGGTGTCCACGCCGTCGCTGCTGGTGGCTCTGCACGTGGCCTACCGAGAGCACCGCGAGCGCAAACACAAGCGCAGGCTCTACCAGGACAAGGGCAGCATTGACGGCGGCCTGCTGTTCACGTACATCACCAGCCTGGTCCTCAAGACGTCTTTCGAGGTGGGCACGCTGCTGGCCTTCTACCTGCTGTACAGCGGTTTCCACGTGCCGCGGCTGCTGCGCTGCGCCGAGAGCCCCTGCCCCAACAGCGTGGACTGCTACATCGCCAGAGCCACCGAGAAGAAGATCTTCCTCTACATCATGGGCTGCACCTCCATCCTGTGCATCGCGCTCAACCTGCTGGAGATGGGCTACATCGTGTCCAAGCAGTGCTGGAAGAGCTTCAGCAAGAGATACACTCCGGTGCGGGATGGGGCCACTCGCCCGCCCTCCACCTTTACTCTCGGCCCACCGCAACCCTCATGCACAGCCAAGGAGGAGGGCGATCAGTCTGCGCCGGCGGGACAGGAGACAGCCTGAACACAGACTCACTAGCTGTGTGTCCACTGTCGGTCAGTGCAGGTCAGGCAGAGGGCGTAGATCTGCTCTTGACATTACACCACATTCACACGGGgctcagcgtcaacgcttgactgagggcgtttctgaagttggggctgacgcaatcgtcatagcagcatcagccaatgaaattcagtcagcaatcggccactgtctagctagtgtatttgcatacagcgatctgattggctgaagcttCACTTAAAAGGTtcagaaagtcccaacttctgcagcgagcaacacctctAAAGCAGtgccaacggatccacaatgcagttcagaaACGCCTGACGTCAcgtattcaaagtgaatgggaagcgttgacgctggcgccccgtgtgaatggggtgtaagtGTGGACGCACATGCATAGAGCAGCACAAACTCTCTTTCACACTTTTAATAAACATGACTAATGCCTCATCCACACTAGCAGCGGCTTCATAGCTGACTGTCGCTCTGGGTGGAGACCTGCGGCAATGTGTGGGACTCGGTGCTTGTGAATTGCGAAGACCCAAGACGATTGACTTCCATCCAGTAGTAGTAAGACTAATActatggcagtcaatggttaGCGGTcttcagcattcttctaaatatcttcttcagtgttcatGAAGGTTTGGAACTAGCGAGTAAATGAGGACAGACTCTTCAGGTTTGGGGGAACTGCATGTGTCTTTAGCTGAAACTAACAGCAGAAATATAGATATATTTGATAGTTTGACTGCAGATATCTGACGTCTGCCAGTTGCAGAGACTCTCACTTTGACTTTCTGAAATCAGTTTAATGTTAATGTATGTGTGGAGCAGTCctaaatgttcattttatttaaatgtatatgtaaataagACGAGAAAGCTGGAttcagctgttgttgttttatgattGGTCAATATTTTCCTGATATACAACTATTAGACAATCTGCAATATGAGGATCAGAAAACATCTAAACAACGAGGAAATACAGcaagaaggtcactggtttgagtctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccggtttcccccacagtccaaacacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtatgtgtgtgagtgtgggtgtttcccagagatgggttgcggctggaagggcatccggtgcataaaaaacttgctggataagttggtggttcgttccactgtggtgaccccagattaatattgtgactaagccaacaagaaaatgaatgaatgaataattgaacggTTGCCCTAAATTCTTaagtaaaaaatactttaaaaacttGAGTAAGCTCTACTTAAAAGATAAGAGTTATTCTAATGTGTCCTATAAGTTAAATACACGTAATGCTTTTAATTAGTGTCAATTTACTTCACTTATCTTTgttaattgcattaaaataaacacaaaagtaATACACAGAGATGATCTGTACTTAATATTTTGATTATTGGAATAAAACAAAACTCTTTGT
>TCONS_00034038
AAATGACACAAAACCACAGGAGTGAACATCAGGTGAGAAGCTCActgatacacacgcacacacacagacttcaTCATCCCACTGCTGTTCATCTGCACAGGAGCTCCAGGAGGAGGACTGAACACCTGAACATGTGCTGATGAAGACACGCTGCTGAAAACACCGCTGTGTGAATCATGAACTGGGGTTTCCTGGAGAACGTGTTGAGCGGGGTGAACCGCTACTCCACCGTGGTGGGCCGGGTCTGGCTCTCCATCCTCTTCATCTTCCGCATCCTGGTGTTCGTGGCGGCCGCCGAGCAGGTGTGGAAGGACGAGTTCAAGGACTTCGTCTGCAACACGCAGCAGCCGGGCTGCGAGCAGGTGTGCTTCGACCACTTCTTCCCCATCTCTCAGGTGCGTCTGTGGGCGCTGCAGCTCATCATGGTGTCCACGCCGTCGCTGCTGGTGGCTCTGCACGTGGCCTACCGAGAGCACCGCGAGCGCAAACACAAGCGCAGGCTCTACCAGGACAAGGGCAGCATTGACGGCGGCCTGCTGTTCACGTACATCACCAGCCTGGTCCTCAAGACGTCTTTCGAGGTGGGCACGCTGCTGGCCTTCTACCTGCTGTACAGCGGTTTCCACGTGCCGCGGCTGCTGCGCTGCGCCGAGAGCCCCTGCCCCAACAGCGTGGACTGCTACATCGCCAGAGCCACCGAGAAGAAGATCTTCCTCTACATCATGGGCTGCACCTCCATCCTGTGCATCGCGCTCAACCTGCTGGAGATGGGCTACATCGTGTCCAAGCAGTGCTGGAAGAGCTTCAGCAAGAGATACACTCCGGTGCGGGATGGGGCCACTCGCCCGCCCTCCACCTTTACTCTCGGCCCACCGCAACCCTCATGCACAGCCAAGGAGGAGGGCGATCAGTCTGCGCCGGCGGGACAGGAGACAGCCTGAACACAGACTCACTAGCTGTGTGTCCACTGTCGGTCAGTGCAGGTCAGGCAGAGGGCGTAGATCTGCTCTTGACATTACACCACATTCACACGGGgctcagcgtcaacgcttgactgagggcgtttctgaagttggggctgacgcaatcgtcatagcagcatcagccaatgaaattcagtcagcaatcggccactgtctagctagtgtatttgcatacagcgatctgattggctgaagcttCACTTAAAAGGTtcagaaagtcccaacttctgcagcgagcaacacctctAAAGCAGtgccaacggatccacaatgcagttcagaaACGCCTGACGTCAcgtattcaaagtgaatgggaagcgttgacgctggcgccccgtgtgaatggggtgtaagtGTGGACGCACATGCATAGAGCAGCACAAACTCTCTTTCACACTTTTAATAAACATGACTAATGCCTCATCCACACTAGCAGCGGCTTCATAGCTGACTGTCGCTCTGGGTGGAGACCTGCGGCAATGTGTGGGACTCGGTGCTTGTGAATTGCGAAGACCCAAGACGATTGACTTCCATCCAGTAGTAGTAAGACTAATActatggcagtcaatggttaGCGGTcttcagcattcttctaaatatcttcttcagtgttcatGAAGGTTTGGAACTAGCGAGTAAATGAGGACAGACTCTTCAGGTTTGGGGGAACTGCATGTGTCTTTAGCTGAAACTAACAGCAGAAATATAGATATATTTGATAGTTTGACTGCAGATATCTGACGTCTGCCAGTTGCAGAGACTCTCACTTTGACTTTCTGAAATCAGTTTAATGTTAATGTATGTGTGGAGCAGTCctaaatgttcattttatttaaatgtatatgtaaataagACGAGAAAGCTGGAttcagctgttgttgttttatgattGGTCAATATTTTCCTGATATACAACTATTAGACAATCTGCAATATGAGGATCAGAAAACATCTAAACAACGAGGAAATACAGGTGTTCATATTGAGTTCTGGGCGGCACgctggttagcactgtggcctcacagcaagaaggtcactggtttgagtctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccggtttcccccacagtccaaacacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtatgtgtgtgagtgtgggtgtttcccagagatgggttgcggctggaagggcatccggtgcataaaaaacttgctggataagttggtggttcgttccactgtggtgaccccagattaatattgtgactaagccaacaagaaaatgaatgaatgaataattgaacggTTGCCCTAAATTCTTaagtaaaaaatactttaaaaacttGAGTAAGCTCTACTTAAAAGATAAGAGTTATTCTAATGTGTCCTATAAGTTAAATACACGTAATGCTTTTAATTAGTGTCAATTTACTTCACTTATCTTTgttaattgcattaaaataaacacaaaagtaATACACAGAGATGATCTGTACTTAATATTTTGATTATTGGAATAAAACAAAACTCTTTGTA
>TCONS_00034039
TCTTGATGGTTCTGCTGTGCTGTGGTCCTGATGCTCTTCTTCTGTGTCTCCGCAGCCGCTGTGTGAATCATGAACTGGGGTTTCCTGGAGAACGTGTTGAGCGGGGTGAACCGCTACTCCACCGTGGTGGGCCGGGTCTGGCTCTCCATCCTCTTCATCTTCCGCATCCTGGTGTTCGTGGCGGCCGCCGAGCAGGTGTGGAAGGACGAGTTCAAGGACTTCGTCTGCAACACGCAGCAGCCGGGCTGCGAGCAGGTGTGCTTCGACCACTTCTTCCCCATCTCTCAGGTGCGTCTGTGGGCGCTGCAGCTCATCATGGTGTCCACGCCGTCGCTGCTGGTGGCTCTGCACGTGGCCTACCGAGAGCACCGCGAGCGCAAACACAAGCGCAGGCTCTACCAGGACAAGGGCAGCATTGACGGCGGCCTGCTGTTCACGTACATCACCAGCCTGGTCCTCAAGACGTCTTTCGAGGTGGGCACGCTGCTGGCCTTCTACCTGCTGTACAGCGGTTTCCACGTGCCGCGGCTGCTGCGCTGCGCCGAGAGCCCCTGCCCCAACAGCGTGGACTGCTACATCGCCAGAGCCACCGAGAAGAAGATCTTCCTCTACATCATGGGCTGCACCTCCATCCTGTGCATCGCGCTCAACCTGCTGGAGATGGGCTACATCGTGTCCAAGCAGTGCTGGAAGAGCTTCAGCAAGAGATACACTCCGGTGCGGGATGGGGCCACTCGCCCGCCCTCCACCTTTACTCTCGGCCCACCGCAACCCTCATGCACAGCCAAGGAGGAGGGCGATCAGTCTGCGCCGGCGGGACAGGAGACAGCCTGAACACAGACTCACTAGCTGTGTGTCCACTGTCGGTCAGTGCAGGTCAGGCAGAGGGCGTAGATCTGCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000071042

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034037 False 2507 mRNA 0.49 3 190028 194621
TCONS_00034038 False 2560 mRNA 0.49 2 190028 194622
TCONS_00034039 True 902 mRNA 0.62 1 192170 193071

Neighbor

gene id symbol gene type direction distance location
XLOC_017042 BX511077.1 coding upstream 2886 172162 ~ 187142 (+)
XLOC_017041 pcare2 coding upstream 76711 106481 ~ 113317 (+)
XLOC_017040 olfcb1 coding upstream 84016 98179 ~ 106012 (+)
XLOC_017039 zgc:112001 coding upstream 99773 88168 ~ 90255 (+)
XLOC_017038 lrfn2b coding upstream 113728 25370 ~ 76300 (+)
XLOC_017044 lama4 coding downstream 24264 218886 ~ 259965 (+)
XLOC_017045 tube1 coding downstream 68373 262995 ~ 318532 (+)
XLOC_017046 si:dkey-119m7.8 coding downstream 125793 320415 ~ 322619 (+)
XLOC_017047 fynb coding downstream 133790 328412 ~ 396013 (+)
XLOC_017048 ndufaf4 coding downstream 205865 400487 ~ 403812 (+)
XLOC_017056 NA non-coding downstream 487225 681847 ~ 682292 (+)
XLOC_017061 NA non-coding downstream 702283 896905 ~ 900380 (+)
XLOC_017065 NA non-coding downstream 1005670 1200292 ~ 1203874 (+)
XLOC_017070 NA non-coding downstream 1160041 1354663 ~ 1355683 (+)
XLOC_017074 NA non-coding downstream 1469137 1663759 ~ 1725048 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01083065_00006785_00007564 CX28.8, GJB7 coding CI01083065 null 6785 ~ 8070 (+)
bowfin (Amia calva) AMCG00003612 NA coding CM030121.1 CM030121.1 11485010 ~ 11487557 (-)