XLOC_017065


Basic Information

Item Value
gene id XLOC_017065
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1200292 ~ 1203874 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036535
GTGTGTCAATTACAGATGTTTATCCTCAATTCAAAAACAGAACCACATTTGTTTTAGTAGTAAACCACTGTCTCTTGCTGTTCTGAACGGTGACTTTATTAAACACATTTGCATATGCTAATAatctatatataaaacaaaaacatgtctgACTGTTGCGACTCTCTGTCAAGAGCATTATTATTTTAGACACTaaatctgggcCTTATTGGCCGTCAGATACACAACAATCTCCAGCCAGAGGCACAGCGGTTTCTCTTCCACGTTTACATCGACACAGTTTATTCAAGATGAATTAGTGACGTACAGAAGAGCAGCTGAACGTGACGGTCAATACAGATCCCTTTGCAGCAGCTGCAGACTGTAAACAATCACTCTAGTAGTTGCACatctacacaaacaaacaagcagctCATCACATATTAGTGGTTAACATCCGTCAAGACAGACGACAAACATTTGAATGTAGtggattaaagattaaaaaacattaaagacGTCACTTTGAAATCATACTGACCATCTCTTTTCTGTTTTGGGTCGCTTCTGAACATTTTAACAGTAGATATATGCAGGTTTTGCATGCAAACGACATGATCAGAAGGTTCCGGTTCACACAGATGCATAAAAAACACTGCGTCACAGGTCAGTAGTGATGTCACTTTGTAATGAAGCACATGATACACGTGCATCATgtcactgtttttaacagaatcaTGTTTCTGTCATATATATTGAGACAGCAACAGCACATTTTCATGCTCTCAATAAAGCAACTAAGATTTGAAGTTTTTAGATGAAAACCGTGGcgtaaagcagtgtttctcaaccacgttcatgaagctttgcacattttccatgtctcctgaAGCAAACACAGCTGATTTAGCTTCATTGATTAGccgagactgaaagacctgtgatGGGTGTGACAGAtgaaggagacatccaaaacatgcagtgttggtggtcctccaggaacgtggttgggAAACAGTGGTGTAGATGGTGAATCTTTGAATGAAGTGATGCTCTCAGGACTAGGCATGGGATAGGCATCCTAAAGTATGTCTaagattttttattaacttttttttgttttgttttttaggataagcagaaaagatctccaaagatgccgttttaaattgtaaagaaatctgggaaagacaaatttgggaaatcctaacaGATTCCAGTAATCCTGGGCTAAAATCTGTGGTGGCTTAGAGGCCATCGTGATCAGATTTTCCCtctgatgaagttctggcagaTTCAGAAGACCCTGCAGTGATTCAAGATCGACTCAATCAATGCGACAACTTCAAACCACCATAGGGGCATGTCAAAACAGCTTACCACTGGCTTTACCATCAAGGCACGCTGAGAGCACAATGACCACTTCAGTTAATGTGTCTCGAGAAGGATTCATGTCAGGACGCAGGACAGTGAAAGTCACGGAGGGATGACGTCAAACTCTGGGTGAGTTTTGCCTTGTGTCGGTGTGTTTGGCACGTCTTTACTCAGATACTACAGTGTCACATGGAGATCGTGAGATTCTGGCAGTCTGTCAAGCTACAATAGTTTAGGGTTATTACAAATGGCACAGTGTGAGCCGGGACAACACTCCCTCAGACTTGGATGACTCCAGCAACCAGAAGTCCTGAATAAAAGAATCCTGCATGAAAACACCACAGACCCTCCTGCTGTCTGCTCTCAAGGAAAAACGTGGACTTCTGAAGCTCCTACACTTTGTGTTAGCTGCTCTCCAGAAGTGTTTCCTCCAGTCTTTCCTCCAGAAGGGTTTCCTCCAGAAGTCTTTCCTCCAGTCCTTCCTCCAGAAGTCTTTCCTCCAGAATGTTTCCTCCAGAAGTGTTTCCTCCAGTCCTTCCTCCA
>TCONS_00036536
GTGTGTCAATTACAGATGTTTATCCTCAATTCAAAAACAGAACCACATTTGTTTTAGTAGTAAACCACTGTCTCTTGCTGTTCTGAACGGTGACTTTATTAAACACATTTGCATATGCTAATAatctatatataaaacaaaaacatgtctgACTGTTGCGACTCTCTGTCAAGAGCATTATTATTTTAGACACTaaatctgggcCTTATTGGCCGTCAGATACACAACAATCTCCAGCCAGAGGCACAGCGGTTTCTCTTCCACGTTTACATCGACACAGTTTATTCAAGATGAATTAGTGACGTACAGAAGAGCAGCTGAACGTGACGGTCAATACAGATCCCTTTGCAGCAGCTGCAGACTGTAAACAATCACTCTAGTAGTTGCACatctacacaaacaaacaagcagctCATCACATATTAGTGGTTAACATCCGTCAAGACAGACGACAAACATTTGAATGTAGtggattaaagattaaaaaacattaaagacGTCACTTTGAAATCATACTGACCATCTCTTTTCTGTTTTGGGTCGCTTCTGAACATTTTAACAGTAGATATATGCAGGTTTTGCATGCAAACGACATGATCAGAAGGTTCCGGTTCACACAGATGCATAAAAAACACTGCGTCACAGGTCAGTAGTGATGTCACTTTGTAATGAAGCACATGATACACGTGCATCATgtcactgtttttaacagaatcaTGTTTCTGTCATATATATTGAGACAGCAACAGCACATTTTCATGCTCTCAATAAAGCAACTAAGATTTGAAGTTTTTAGATGAAAACCGTGGcgtaaagcagtgtttctcaaccacgttcatgaagctttgcacattttccatgtctcctgaAGCAAACACAGCTGATTTAGCTTCATTGATTAGccgagactgaaagacctgtgatGGGTGTGACAGAtgaaggagacatccaaaacatgcagtgttggtggtcctccaggaacgtggttgggAAACAGTGGTGTAGATGGTGAATCTTTGAATGAAGTGATGCTCTCAGGACTAGGCATGGGATAGGCATCCTAAAGTATGTCTaagattttttattaacttttttttgttttgttttttaggataagcagaaaagatctccaaagatgccgttttaaattgtaaagaaatctgggaaagacaaatttgggaaatcctaacaGATTCCAGTAATCCTGGGCTAAAATCTGTGGTGGCTTAGAGGCCATCGTGATCAGATTTTCCCtctgatgaagttctggcagaTTCAGAAGACCCTGCAGTGATTCAAGATCGACTCAATCAATGCGACAACTTCAAACCACCATAGGGGCATGTCAAAACAGCTTACCACTGGCTTTACCATCAAGGCACGCTGAGAGCACAATGACCACTTCAGTTAATGTGTCTCGAGAAGGATTCATGTCAGGACGCAGGACAGTGAAAGTCACGGAGGGATGACGTCAAACTCTGGGTGAGTTTTGCCTTGTGTCGGTGTGTTTGGCACGTCTTTACTCAGATACTACAGTGTCACATGGAGATCGTGAGATTCTGGCAGTCTGTCAAGCTACAATAGTTTAGGGTTATTACAAATGGCACAGTGTGAGCCGGGACAACACTCCCTCAGACTTGGATGACTCCAGCAACCAGAAGTCCTGAATAAAAGAATCCTGCATGAAAACACCACAGACCCTCCTGCTGTCTGCTCTCAAGGAAAAACGTGGACTTCTGAAGCTCCTACACTTTGTGTTAGCTGCTCTCCAGAAGTGTTTCCTCCAGTCTTTCCTCCAGAAGGGTTTCCTCCAGAAGTCTTTCCTCCAGTCCTTCCTCCAGAAGTCTTTCCTCCAGAATGTTTCCTCCAGAAGTGTTTCCTCCAGTCCTTCCTCCA
>TCONS_00036537
GTGTGTCAATTACAGATGTTTATCCTCAATTCAAAAACAGAACCACATTTGTTTTAGTAGTAAACCACTGTCTCTTGCTGTTCTGAACGGTGACTTTATTAAACACATTTGCATATGCTAATAatctatatataaaacaaaaacatgtctgACTGTTGCGACTCTCTGTCAAGAGCATTATTATTTTAGACACTaaatctgggcCTTATTGGCCGTCAGATACACAACAATCTCCAGCCAGAGGCACAGCGGTTTCTCTTCCACGTTTACATCGACACAGTTTATTCAAGATGAATTAGTGACGTACAGAAGAGCAGCTGAACGTGACGGTCAATACAGATCCCTTTGCAGCAGCTGCAGACTGTAAACAATCACTCTAGTAGTTGCACatctacacaaacaaacaagcagctCATCACATATTAGTGGTTAACATCCGTCAAGACAGACGACAAACATTTGAATGTAGtggattaaagattaaaaaacattaaagacGTCACTTTGAAATCATACTGACCATCTCTTTTCTGTTTTGGGTCGCTTCTGAACATTTTAACAGTAGATATATGCAGGTTTTGCATGCAAACGACATGATCAGAAGGTTCCGGTTCACACAGATGCATAAAAAACACTGCGTCACAGGTCAGTAGTGATGTCACTTTGTAATGAAGCACATGATACACGTGCATCATgtcactgtttttaacagaatcaTGTTTCTGTCATATATATTGAGACAGCAACAGCACATTTTCATGCTCTCAATAAAGCAACTAAGATTTGAAGTTTTTAGATGAAAACCGTGGcgtaaagcagtgtttctcaaccacgttcatgaagctttgcacattttccatgtctcctgaAGCAAACACAGCTGATTTAGCTTCATTGATTAGccgagactgaaagacctgtgatGGGTGTGACAGAtgaaggagacatccaaaacatgcagtgttggtggtcctccaggaacgtggttgggAAACAGTGGTGTAGATGGTGAATCTTTGAATGAAGTGATGCTCTCAGGACTAGGCATGGGATAGGCATCCTAAAGTATGTCTaagattttttattaacttttttttgttttgttttttaggataagcagaaaagatctccaaagatgccgttttaaattgtaaagaaatctgggaaagacaaatttgggaaatcctaacaGATTCCAGTAATCCTGGGCTAAAATCTGTGGTGGCTTAGAGGCCATCGTGATCAGATTTTCCCtctgatgaagttctggcagaTTCAGAAGACCCTGCAGTGATTCAAGATCGACTCAATCAATGCGACAACTTCAAACCACCATAGGGGCATGTCAAAACAGCTTACCACTGGCTTTACCATCAAGGCACGCTGAGAGCACAATGACCACTTCAGTTAATGTGTCTCGAGAAGGATTCATGTCAGGACGCAGGACAGTGAAAGTCACGGAGGGATGACGTCAAACTCTGGGTGAGTTTTGCCTTGTGTCGGTGTGTTTGGCACGTCTTTACTCAGATACTACAGTGTCACATGGAGATCGTGAGATTCTGGCAGTCTGTCAAGCTACAATAGTTTAGGGTTATTACAAATGGCACAGTGTGAGCCGGGACAACACTCCCTCAGACTTGGATGACTCCAGCAACCAGAAGTCCTGAATAAAAGAATCCTGCATGAAAACACCACAGACCCTCCTGCTGTCTGCTCTCAAGGAAAAACGTGGACTTCTGAAGCTCCTACACTTTGTGTTAGCTGCTCTCCAGAAGTGTTTCCTCCAGTCTTTCCTCCAGAAGGGTTTCCTCCAGAAGTCTTTCCTCCAGTCCTTCCTCCAGAAGTCTTTCCTCCAGAATCTTTCCTCCAGAAGTGTTTCCTCCAGTCCTTCCTCCA
>TCONS_00034075
TTGCTGTTCTGAACGGTGACTTTATTAAACACATTTGCATATGCTAATAatctatatataaaacaaaaacatgtctgACTGTTGCGACTCTCTGTCAAGAGCATTATTATTTTAGACACTaaatctgggcCTTATTGGCCGTCAGATACACAACAATCTCCAGCCAGAGGCACAGCGGTTTCTCTTCCACGTTTACATCGACACAGTTTATTCAAGATGAATTAGTGACGTACAGAAGAGCAGCTGAACGTGACGGTCAATACAGATCCCTTTGCAGCAGCTGCAGACTGTAAACAATCACTCTAGTAGTTGCACatctacacaaacaaacaagcagctCATCACATATTAGTGGTTAACATCCGTCAAGACAGACGACAAACATTTGAATGTAGtggattaaagattaaaaaacattaaagacGTCACTTTGAAATCATACTGACCATCTCTTTTCTGTTTTGGGTCGCTTCTGAACATTTTAACAGTAGATATATGCAGGTTTTGCATGCAAACGACATGATCAGAAGGTTCCGGTTCACACAGATGCATAAAAAACACTGCGTCACAGGTCAGTAGTGATGTCACTTTGTAATGAAGCACATGATACACGTGCATCATgtcactgtttttaacagaatcaTGTTTCTGTCATATATATTGAGACAGCAACAGCACATTTTCATGCTCTCAATAAAGCAACTAAGATTTGAAGTTTTTAGATGAAAACCGTGGcgtaaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096569

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036535 False 1896 lncRNA 0.42 3 1200292 1203603
TCONS_00036536 False 1896 lncRNA 0.42 3 1200292 1203802
TCONS_00036537 False 1896 lncRNA 0.42 3 1200292 1203874
TCONS_00034075 True 742 lncRNA 0.38 2 1200366 1202182

Neighbor

gene id symbol gene type direction distance location
XLOC_017064 lyrm2 coding upstream 1283 1196386 ~ 1199009 (+)
XLOC_017063 pnrc1 coding upstream 74897 1121458 ~ 1125395 (+)
XLOC_017062 BX537249.1 coding upstream 110689 1088658 ~ 1089603 (+)
XLOC_017061 NA coding upstream 299912 896905 ~ 900380 (+)
XLOC_017060 nt5e coding upstream 352224 826459 ~ 848068 (+)
XLOC_017066 hsd3b2 coding downstream 68652 1272526 ~ 1276175 (+)
XLOC_017067 lrp11 coding downstream 74310 1278184 ~ 1287799 (+)
XLOC_017068 nup43 coding downstream 112621 1316495 ~ 1327859 (+)
XLOC_017069 tab2 coding downstream 125635 1329509 ~ 1350296 (+)
XLOC_017070 NA coding downstream 150789 1354663 ~ 1355683 (+)
XLOC_017056 NA non-coding upstream 518000 681847 ~ 682292 (+)
XLOC_017074 NA non-coding downstream 459885 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 1009815 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 1058059 2261933 ~ 2266612 (+)
XLOC_017085 NA non-coding downstream 1077750 2281624 ~ 2284813 (+)

Expression


Co-expression Network