XLOC_017067 (lrp11)


Basic Information

Item Value
gene id XLOC_017067
gene name lrp11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1278184 ~ 1287799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034078
atcttttgtttgtttttaggacaacaatatctccagcagaaaagatgcggttttatattaaatttaaaccaaTGCAAATCGCAAATCATGTGATATTTCCCTCAGAGGAAGAAGGTACAGTCTACAGTCAAAACAAACCCATCTTTTTCAtagaaataaatctaaattaagaTGCTGAAATCATAAAAtatctatgcaaaaaaaaaaataaaaatcaagatgtGAAATAAAATGATCTCTAATATCAGAGTTATAAATGTGCGTATTCGTGCTTTGTGCTGTCTGGTCTTTCTGGACCCCAGAGTGTCCCCTACAGGAGAGATTGAACACGGCAGACTGAAGCTGGATCAGTCGCTGCGGCTGCTTCAGTTCTGGCGCTGGACTCGACAGGTGCAGCTTCAGCTTCATCCTCCTCTTCAACAATGCGCAAAACGGCGATTCTTACATCCTAATCTAACGATCGGGATCGCAAATGTGATGTGATTCTTTCCACGGTGGGAAAGTAGTGTTTAATCCCATCATCTTCATCCTTGTTCTCCTCATCATCATGTTTCCGCGGGCGCATCATGTTCTGCTGTGCGCAGCTCTGCTCTGGGTCTCCAGCTCGGCCGGGGCGCGCTCCTCTCCAACATCCGAGCTCAAATCCCGGATCTCCGGCGTGGAGGAGCTGCTGGAGGAGTTCCGCAAACAGCTGCAGCAAGACGAGCCAAGCTCCCGGGAGCAGGAGGGGGATGGAGACCGCTGCGTCGCGGGTTTCAGGGCGGCGGAGTCGCGCATCATCCGCGCCAGCGCGTCCATCGAGCAGGGCGCCGCGTTCCTGTCCGCGCCGCCGCGCGTGTTCAGCTGGAGGGACTGCGCGCGCGCCTGCTGCTCGCTCCCGCACTGTACAGTCGCCATCATCCAGGAGGACCTCAAGCAGCCTGACGACAGTTTGCGCTGCTATTTGTTCAACTGCACCTACAGGGGCAAGAGCGTGTGCTCGTTCTCCTACCAGCCGGGATTCAGCACCTACAGCCGCTTGAACGACAGCTCCGGGGCCCCGGGCACTGCTGCCACCGACCGGCCGGCCGGGAGACCCGCACCTGCGCTCGGCGAGGAGGAGGCCATGATGCAGGATCTGGACGAGCCGCCCCGCAGTGACGCTGGTCAAGATCTAGTGGTGCAGCTGCCGACGGACTGGGCAGTGCTGGACGGCAGAGACAGTACCGATGATCACCACATCACCCGCTATGAGTGGGCTCTCGTCAGAGGAGACCCTTCTGTTAAAATGAAGGTAACTCACCCGGGCCTGCTGAAGCTCAGTGGACTCAGAGAAGGAGTTTACACCTTCGAGATCACGGTCATCGACACGGCGGGACAGAAGAGCTCAGACAACGTGTCCGTCAGCGTGCTCGCCCCGGCCCCAAACGCACAGGTTTGCACAGGTCACTGTTCTCGCTATCAGTTCATGTGTGATGATGGCTGCTGTATCGACATTGGTTACGCCTGCGATGGAAAGCAGCACTGCCCTGACCGCTCAGATGAGGACTTCTGCCAGAACTTTGATAGTGGTCGTAAGTCCAGTTCCTCAAAACATGGAGCAGATCTACAGACTGAAGCTGCAGCACAGACCCCCACAGAGATGCAGCACACCGATATCTCCAAACCTGAAGCACACCAACATTACGGCTTCAGTAATCAAGgtgcgATCCTGCCGCTGGCCTTCGGTCTGCTCATCAGCGCTCTGCTCTTGCTGATGGTGGGCTGCCGGCTCTTCCTCGTGCGCCGCAGGCTGAAGAAAGCTCTGCCTCTGACCACAGAAGAGTCCGACTACCTCATCAACGGCATGTATCTGTAGCAGCGCAGACCAAAGCCAGCCTCCAgtctgctgagtgtgtgtgtag

Function

symbol description
lrp11 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRP11 (LDL receptor related protein 11).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7847 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRP11 (LDL receptor related protein 11).

Ensembl:

ensembl_id ENSDARG00000034076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034078 True 1883 mRNA 0.55 6 1278184 1287799

Neighbor

gene id symbol gene type direction distance location
XLOC_017066 hsd3b2 coding upstream 2009 1272526 ~ 1276175 (+)
XLOC_017065 NA coding upstream 74310 1200292 ~ 1203874 (+)
XLOC_017064 lyrm2 coding upstream 79175 1196386 ~ 1199009 (+)
XLOC_017063 pnrc1 coding upstream 152789 1121458 ~ 1125395 (+)
XLOC_017062 BX537249.1 coding upstream 188581 1088658 ~ 1089603 (+)
XLOC_017068 nup43 coding downstream 28696 1316495 ~ 1327859 (+)
XLOC_017069 tab2 coding downstream 41710 1329509 ~ 1350296 (+)
XLOC_017070 NA coding downstream 66864 1354663 ~ 1355683 (+)
XLOC_017071 mmachc coding downstream 97875 1385674 ~ 1393020 (+)
XLOC_017072 C20H6orf58 coding downstream 110765 1398564 ~ 1406308 (+)
XLOC_017061 NA non-coding upstream 377804 896905 ~ 900380 (+)
XLOC_017056 NA non-coding upstream 595892 681847 ~ 682292 (+)
XLOC_017074 NA non-coding downstream 375960 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 925890 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 974134 2261933 ~ 2266612 (+)
XLOC_017085 NA non-coding downstream 993825 2281624 ~ 2284813 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_00795214_00806009 LRP11 coding CI01000325 null 795214 ~ 806094 (+)