XLOC_017068 (nup43)


Basic Information

Item Value
gene id XLOC_017068
gene name nup43
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1316495 ~ 1327859 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034079
AGATGCGGAAAATTATTCTGCGCGCAAACTCTCACAGCACATTTTGGGTGGCTGCTGAGTGTTTTGGCACTGATTGAGTGCACTTTAGAAATCACTATGGTTTCGGTCACCTGTTTTCTCAAATAGTGCATTATTAAGGTTATAGGGGGCGATTTCGGATACAGCCAAGAAGTGTTTTGTGAACGCGCTTGATCCTTTCAGGCCACCGTACTGTCGAGTACGCAGTCTGCGGTGGCGGGATACACTAGCAGCTGCACGTGAAGCTCCCTAAACTCCATAATCAGCACACAACGCCAGTGAGACGCGATGGACTGCATCAGCGCGAAGTACATCTCCCAGAAGATCAGCAAGACGCGCTGGCGGCCGGTGTCCGCGGCGTCCCTGCAGCAGCCCGAGGTGTTCGCCACCGGCTCCTGGGACAACGAGAATAACAAAGTGTCCATCTGGTCAGTGGGAGACCGCGGGGGCTCAACCCTGGATGGAGACCTGGATGAGGAGCCTCAGTTACTATGCGACTCTCAGCATGAGGGAGATGTGATGGACCTGCAGTTTCTAGATCAAGACCGGCTTGTTTCTGCATCTTCCAGCGGGGCCGTGAGCATCTTTAAGCTGCAGTCGGACTGCCAGGCTCTGTCATTGGCTCACGTGTGGGAGAGAGCTCATCGGTGTTCCTGTGATAATGCACCGTGCACAGCCATAGTGTGCAGAAGTCCTGAAATAGTGTCCGTGGGTGAGGACGGGCGAGTTATTCTTTACAAGGCGGATCAGGCGGAGGTCACGCGCGTTATTGAAAATGCAGACAGCAGTACAATTCATGCTGTAACGTTTCTGAGGACGACTGAAGTTCTGACTGTGAACTCCATCGGTCAGCTGAAGATGTGGGACTTCAGACAGCAGAGTGACAGTCCTGCGCAGATTCTCTcactCACCGGGGATAGAGTGCCCTTGCACTGTGTGGACAAACACCCAAACCAGCAGCACATAGTTGCCACAGGAGGGCAGGATGGGATGCTTTGTATCTGGGATGTGAGACAGGGAAACACGCCTTTCTCTCTCACCGAGGCACATTCAGCAGAAATGTGGGAAGTACATTTTCATCCATCCAACCCCAATCACTTGTTTACATGCTCAGAGGACGGGTCTCTGCTACACTGGGAGAGCACTTCAGGATCAGACGTGAGCACACTTCTACAGAAGGGCTGGCACAGTAGGGTCGTCTCACAAAGTGCCATATCGCTTGCTGGAGAAAATGACTCTGCGGTCAGTGCCTGGCTCGCTGGGGACTCCAGCAAAAGCAGATTGGAGGCAACTCATATGCTCCCCAGCCAGACCCTGTCTGTCAACAGCCTTGATGTGCTTGAGCAGTGTTTAGTTTGCGGGACTGATGGCGAGGCTTTGTACATCCACAGACAAGTTCCTGTTTGATTACTGACCTAAAACATGTATTAAGAGACTGTCATTTTTTATATACAACATTTCATTggtttttcaaataaaattacacaTAAACATTATGGAATCTATTTGGGGAACGTAATAAAACAGTGTATGCAGTTCACTGA
>TCONS_00034080
GGACTGCATCAGCGCGAAGTACATCTCCCAGAAGATCAGCAAGACGCGCTGGCGGCCGGTGTCCGCGGCGTCCCTGCAGCAGCCCGAGGTGTTCGCCACCGGCTCCTGGGACAACGAGAATAACAAAGTGTCCATCTGGTCAGTGGGAGACCGCGGGGGCTCAACCCTGGATGGAGACCTGGATGAGGAGCCTCAGTTACTATGCGACTCTCAGCATGAGGGAGATGTGATGGACCTGCAGTTTCTAGATCAAGACCGGCTTGTTTCTGCATCTTCCAGCGGGGCCGTGAGCATCTTTAAGCTGCAGTCGGACTGCCAGGCTCTGTCATTGGCTCACGTGTGGGAGAGAGCTCATCGGTGTTCCTGTGATAATGCACCGTGCACAGCCATAGTGTGCAGAAGTCCTGAAATAGTGTCCGTGGGTGAGGACGGGCGAGTTATTCTTTACAAGGCGGATCAGGCGGAGGTCACGCGCGTTATTGGGAACACCACAGTGGTTTTGGATTTGAAGGTTTGTtgttgtgggaagaagaagacggGGTTGACGATAAG
>TCONS_00034081
CAGAAGATCAGCAAGACGCGCTGGCGGCCGGTGTCCGCGGCGTCCCTGCAGCAGCCCGAGGTGTTCGCCACCGGCTCCTGGGACAACGAGAATAACAAAGTGTCCATCTGGTCAGTGGGAGACCGCGGGGGCTCAACCCTGGATGGAGACCTGGATGAGGAGCCTCAGTTACTATGCGACTCTCAGCATGAGGGAGATGTGATGGACCTGCAGGCTCTGTCATTGGCTCACGTGTGGGAGAGAGCTCATCGGTGTTCCTGTGATAATGCACCGTGCACAGCCATAGTGTGCAGAAGTCCTGAAATAGTGTCCGTGGGTGAGGACGGGCGAGTTATTCTTTACAAGGCGGATCAGGCGGAGGTCACGCGCGTTATTGAAAATGCAGACAGCAGTACAATTCATGCTGTAACGTTTCTGAGGACGACTGAAGTTCTGACTGTGAACTCCATCGGTCAGCTGAAGATGTGGGACTTCAGACAGCAGAGTGACAGTCCTGCGCAGATTCTCTcactCACCGGGGATAGAGTGCCCTTGCACTGTGTGGACAAACACCCAAACCAGCAGCACATAGTTGCCACAGGAGGGCAGGATGGGATGCTTTGTATCTGGGATGTGAGACAGGGAAACACGCCTTTCTCTCTCACCGAGGCACATTCAGCAGAAA

Function

symbol description
nup43 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human NUP43 (nucleoporin 43).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0031080 nuclear pore outer ring cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2533 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human NUP43 (nucleoporin 43).

Ensembl:

ensembl_id ENSDARG00000043884

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034079 False 1562 mRNA 0.51 8 1316495 1327859
TCONS_00034080 False 552 mRNA 0.56 5 1316803 1323055
TCONS_00034081 True 664 mRNA 0.55 5 1316831 1324995

Neighbor

gene id symbol gene type direction distance location
XLOC_017067 lrp11 coding upstream 28696 1278184 ~ 1287799 (+)
XLOC_017066 hsd3b2 coding upstream 40320 1272526 ~ 1276175 (+)
XLOC_017065 NA coding upstream 112621 1200292 ~ 1203874 (+)
XLOC_017064 lyrm2 coding upstream 117486 1196386 ~ 1199009 (+)
XLOC_017063 pnrc1 coding upstream 191100 1121458 ~ 1125395 (+)
XLOC_017069 tab2 coding downstream 1650 1329509 ~ 1350296 (+)
XLOC_017070 NA coding downstream 26804 1354663 ~ 1355683 (+)
XLOC_017071 mmachc coding downstream 57815 1385674 ~ 1393020 (+)
XLOC_017072 C20H6orf58 coding downstream 70705 1398564 ~ 1406308 (+)
XLOC_017073 C20H6orf58 coding downstream 84334 1412193 ~ 1421005 (+)
XLOC_017061 NA non-coding upstream 416115 896905 ~ 900380 (+)
XLOC_017056 NA non-coding upstream 634203 681847 ~ 682292 (+)
XLOC_017074 NA non-coding downstream 335900 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 885830 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 934074 2261933 ~ 2266612 (+)
XLOC_017085 NA non-coding downstream 953765 2281624 ~ 2284813 (+)

Expression


Co-expression Network