XLOC_017081 (l3mbtl3)


Basic Information

Item Value
gene id XLOC_017081
gene name l3mbtl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2134816 ~ 2206310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034095
tcaaaattaaagttccGGGTGAACGAGTTTGGGGTACTGGAGGTCATAACAGAAGAGATGGAGGAGGAGAGGGGCAAAAAAGCTCACGCCACCACCACGTGGAGCGTCCCAACCGCACAAGAAGCTCTCTCTGAAGGGTCAGTCTTAAAGCAGGATTCTCCTTGGGGTCAGCGCGGCCTGGTGTGTGTGCGCTGTAACAGGAAGGGCTCTGCGGTGGACTTCCTGCCTGATGGCCTTCACTGCAGCGAGCGCTGTCTGCAGCAGGAGCAAGAAGAGCTGAAGACAGAAGGCTCCAGAATGAACGGAGAGCTTCTGTCGAGGAAGAGGACGCGTCTGGAGAGATCAGCTGAAGACATGGACAGCTCCATGGACATcccggaggaggaggacgagGACTACgaAGAGAAAGAAAGCAGGCGACCAGCCAGAGGAGCGACACGAGGACGCAAGAAACGCAGAGGAGACGCAGCACTGCTCCGATACACGGTGCCGTATGGAGGCAAGAAGAAGGCCTGGTGCTGGGCCTCGTACCTGGAGCAGGAGAGAGCCATCGCTGCACCCAGCAAACTCTTCAAAGagtatcAGTGTTTTCCGCAGTGTAAGAATGGCTTCAGGGTGGGTATGAGGCTGGAGGGCATCGACCCCGAACACCCGTCCATGTACTGCGTCCTGACCATCGCTGaggtgtcaGGGCATCGAATCAGACTCCACTTTGATCACTTTTCTGACTGCTATGACTTCTGGGTAAACTCCAACTCTCCCGACATTCACCCTGTGGGCTGGTGTGAGAAAACCGGACACAAGTTACACCCACCGAAAGggATGAAGGATGAAGAGTTCAGCTGGTCCTCCTACATCAAGCTCAATAAAATCCAGACGGCACCCAAAGCCCTGTTTCACAACCAGAACATGACGGTGACTCCATCAGGTTTCAGGGTTGGCATGAAGCTGGAGGCCGTCTGCAGGAAAGATCCTACTTTCATCTGCGTCGCCACGGTTACGGACATGGTGGACAGCCGCTTCCTGGTGCACTTTGACAACTGGGAGGAAAGTTACGACTACTGGTGTGATGCCACCAGTCCTTATATTCACCCAGTTGGCTGGTGTCAGGAGAACGGCAGGACCCTCAGCACCCCTCCAGGATACCCCGATGCGAACAACTTCTCCTGGGAGAAATACTTGGCCGAGACCAGCTCATTACCAGCTCCTGCTCGAGCCTTCAAagtgAAACCTCCTCATGGTTTTCAGGTGAACATGAAGCTAGAGGTGGTCGACAAGAGGAACCCTGTTCTGATCCGCGTCGCCACAGTAGCTGATACAGACGATCATAGACTCTGGATCCATTTTGATGGCTGGACAGATGAATATGATTACTGGATCGATGCAGACAGTCCAGACGTTCATCCAGCTGGCTGGTGCGCCAAAACCGGACATCCTCTGCAGCCTCCAATCACTTGGTTTATGGAGTCAGCTTCTGAATGA
>TCONS_00034096
ATATATCTGTCAGATCCTGTATGCCAATAAAAAGTGTGAGGATTCACGTGTACTCTAAATTCATAGGCTAATAAAGTGCATTCAGACCATTTAAATTCATCTTTACTCATTTTATTAGCTAGCTATACTTCATTACACTATATTTCATTTGAATAATTTGTTAGAATATTTGCTGCTATAAAGATAAAGACGAATGTGAACAGTTTAGTGAGATCTACTTTCAAGTGGATTAGCTATTAGCTTTTAATATCGTGTTGGTATGCGTTGATATGAAGAATTTGGTCAGGTTTAAAGCAGTTCACTTTGACTTTCAGTCTTCTAGGTGATAGTTAAGAGTCGTTTTGCTGTTTAGCATGTAGTTTTACAGCTTGGTAGTATAGCAAGGACAGTCGTGTACAGTGTGTTTTGTTGCTATGCGGGCTGCCTTTGCTAGTTTGCCTCATATTTGTCTATCGTCGCGTATTAAAAACACACTTATTGCTCGAGAGTTTGACAGTTTGTATTTACTGAGAGGTTTCTGTACATTTTGGGAGGTTCGGCTGCGGGCAGGAATTTATTTTTAGCATCAAAACAGTAATGGCGATGTTTTCCGCCGTCAGAGCGCGTCATTGCACATTTTAAGAGTCAGGGACAGGTTAAAAAGGAGCTTGATGTGTCGGTAATCAATCGCCACATCGCCGAGATCCACACGAATTGTTTCGGCGCAAAACTTTCGATATTGTCATGACGGGCGAGTGTGAAGCGCGACGGCTGTGCGCATGCGCACTGGAGTCCGCCTGGCCAATTTCTCAGTACTCGTGGGAGAATTTGGttccGGGTGAACGAGTTTGGGGTACTGGAGGTCATAACAGAAGAGATGGAGGAGGAGAGGGGCAAAAAAGCTCACGCCACCACCACGTGGAGCGTCCCAACCGCACAAGAAGCTCTCTCTGAAGGGTCAGTCTTAAAGCAGGATTCTCCTTGGGGTCAGCGCGGCCTGGTGTGTGTGCGCTGTAACAGGAAGGGCTCTGCGGTGGACTTCCTGCCTGATGGCCTTCACTGCAGCGAGCGCTGTCTGCAGCAGGAGCAAGAAGAGCTGAAGACAGAAGGCTCCAGAATGAACGGAGAGCTTCTGTCGAGGAAGAGGACGCGTCTGGAGAGATCAGCTGAAGACATGGACAGCTCCATGGACATcccggaggaggaggacgagGACTACgaAGAGAAAGAAAGCAGGCGACCAGCCAGAGGAGCGACACGAGGACGCAAGAAACGCAGAGGAGACGCAGCACTGCTCCGATACACGGTGCCGTATGGAGGCAAGAAGAAGGCCTGGTGCTGGGCCTCGTACCTGGAGCAGGAGAGAGCCATCGCTGCACCCAGCAAACTCTTCAAAGagTGTAAGAATGGCTTCAGGGTGGGTATGAGGCTGGAGGGCATCGACCCCGAACACCCGTCCATGTACTGCGTCCTGACCATCGCTGaggtgtcaGGGCATCGAATCAGACTCCACTTTGATCACTTTTCTGACTGCTATGACTTCTGGGTAAACTCCAACTCTCCCGACATTCACCCTGTGGGCTGGTGTGAGAAAACCGGACACAAGTTACACCCACCGAAAGGTGTGCGGGATGAAGAGTTCAGCTGGTCCTCCTACATCAAGCTCAATAAAATCCAGACGGCACCCAAAGCCCTGTTTCACAACCAGAACATGACGGTGACTCCATCAGGTTTCAGGGTTGGCATGAAGCTGGAGGCCGTCTGCAGGAAAGATCCTACTTTCATCTGCGTCGCCACGGTTACGGACATGGTGGACAGCCGCTTCCTGGTGCACTTTGACAACTGGGAGGAAAGTTACGACTACTGGTGTGATGCCACCAGTCCTTATATTCACCCAGTTGGCTGGTGTCAGGAGAACGGCAGGACCCTCAGCACCCCTCCAGGATACCCCGATGCGAACAACTTCTCCTGGGAGAAATACTTGGCCGAGACCAGCTCATTACCAGCTCCTGCTCGAGCCTTCAAagtgAAACCTCCTCATGGTTTTCAGGTGAACATGAAGCTAGAGGTGGTCGACAAGAGGAACCCTGTTCTGATCCGCGTCGCCACAGTAGCTGATACAGACGATCATAGACTCTGGATCCATTTTGATGGCTGGACAGATGAATATGATTACTGGATCGATGCAGACAGTCCAGACGTTCATCCAGCTGGCTGGTGCGCCAAAACCGGACATCCTCTGCAGCCTCCAATCActCCACAGGACATGTTTGAGGCATCTGAGCAGGCAGGATGTCCCACAGCAGGCTGTCGAGGAGTGGGCCACATTAAAGGAGCCCGATACTCTGGACACCACagTGCTGTCGGCTGCCCGTATTCTGATATAAACCTCAACAAGGACTCTGTTCTGCCGGACCGCTTGAGCGCGGAGACACCGGGCGCTGGAGTGGGTCGTCCACGCAGAGCAGAAGCAAACCAGGAGATTTCAGCAGACGCTAATGATAAACCCGTCACCTGTGTCCCGCTGCTCCCGGATAAAGCAAACACTGGTGTTGAGACGCCAGTCAAGAAACCTGCGGGCACCGAGACCAAGAGGAGGGTTGGACGGCCCTGTAAAGTGCGCAAGGTGGAAGTGCTGCCACAGGAAGAGGAAGTGGAGAGCGAAGTGTCTTCAGTCACTGAAACCAAAGAGTTGACTCTCCAGCAAGCTCTGCACCAGTCCGTCTTTATGCCGTGTTCCAGCCCGTCTCCCAGCATGCCTCACTGCTGGGATCAGCACAGCAAGCTCCTTCCTACAGTTGCAGGCATCACGGCCAGTAAAGTGGCGTCGTGGAGCATTGATGAGGTGATCCAGTTTATCCAAGGACTTCCAGGCTGTAAGGAACAAGTGCGCACCTTTAGAGACGAGCAAATTGACGGCGAGGCCTTCCTGCTGCTGACTCAAGTGGACCTGGTGAAGATCCTCAGCATTAAACTGGGACCCGCTCTGAAAATCTACAACTCCATCCTGATGTTTAAAACCACAGAAAACTCAGCCTGCAACGAGCTCTGATGGTGAGCTGACAGATCAGTGCCGCTTCAGTCCAAGGGCTCATCATCGAGATCCACGCTCTGGCAGAATGAGCCGCtttaacacacactcacacgacATTCATAGCTTACACACTCAATGCTGAACCTCCCTCATTCACAAACGTCTGTGTATGCACTTATTAAGCTACAGTACGTGATGAGCTCATGCCGGGACCTTGCATTAAAGTGTATTTCTCTGA
>TCONS_00036361
tagtatgatttaccatcagacatcttttaaaatggttatgttcctttttttagagtgtgtgtaaactgctggtttcaactgtatgtagagtTAAAGTCCACATAAACCTGAAGCTGTGACGCAGTTTCTGGagaaactgtatataaaaatgagtaaacagtgggtgtggcttgttttttctactgcaagctgattggctgtagtaaagtaggcgtttcattcagaaagactggaaaaagggtttggggagagttattacagctTACAGACTCCTCCTGTTCACCATTTCTGTGTGTTGTCTAAACTGAccgctggaggggcgtggttatgtatgttagccccgcccaacacctcagacagacctaatctgagaatttaactaacaacaaacaggaagtgcattaaAGACTCCAAGAGCAATCTGTTGTTTTCTTTCTtattgacatgcacagatgaattgttcaccactaAACTAGCAGTGTGAGCTAACAGAATCATTATGGTTGCTTTTAGATTTCATGTACTTTaatatagtgtgtgtttgtgtgtgtcctcCAGACGGTGACTCCATCAGGTTTCAGGGTTGGCATGAAGCTGGAGGCCGTCTGCAGGAAAGATCCTACTTTCATCTGCGTCGCCACGGTTACGGACATGGTGGACAGCCGCTTCCTGGTGCACTTTGACAACTGGGAGGAAAGTTACGACTACTGGTAAATTCCCCATGACGACGCTCTGAAGTGTGTGATAATGACATTTCCTGCACACAATCACACTCAAATGATTTGCTgtcctgtgatttatttttttattttttttatttttcaattataaGTCAAAAGCTCAGTGTGTTTAATAATACATGTATCAAGAATGCTTAAAGCCTTACTTTATGCTGCATGACATAGATATTGATTGTTGTTTTGCTAGTTGTATTGAGGTACATGTGTGTGTTTCTTCTTTTGTGCAGGTGTGATGCCACCAGTCCTTATATTCACCCAGTTGGCTGGTGTCAGGAGAACGGCAGGACCCTCAGCACCCCTCCAGGTCAGTAAACACATCCACACCAGTCTCAGGCTCTCTAAtattcagttaaagtcaaaaataCTACCCTcatttgatttctttttcaaatatttcccaaaagatgtgtaacagattcaggaatttttcacagtatttcctataatactttttcttctggcgatagtcttattagttttatttttatcagttttaaatttattaaaaaaacattttaaggtcaatattaatagtcCCCTTAATCA

Function

symbol description
l3mbtl3 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human L3MBTL3 (L3MBTL histone methyl-lysine binding protein 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-127 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human L3MBTL3 (L3MBTL histone methyl-lysine binding protein 3).

Ensembl:

ensembl_id ENSDARG00000025983

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034095 False 1482 mRNA 0.54 15 2134816 2177474
TCONS_00034096 False 3251 mRNA 0.51 21 2139436 2206310
TCONS_00036361 True 1286 lncRNA 0.39 1 2161082 2162367

Neighbor

gene id symbol gene type direction distance location
XLOC_017079 CABZ01088134.1 coding upstream 80269 2039518 ~ 2054547 (+)
XLOC_017078 CABZ01092781.1 coding upstream 99696 1996202 ~ 2035120 (+)
XLOC_017076 lama2 coding upstream 155164 1903481 ~ 1979652 (+)
XLOC_017077 CABZ01103860.1 coding upstream 169993 1960092 ~ 1964823 (+)
XLOC_017075 CABZ01065423.1 coding upstream 243220 1834262 ~ 1891596 (+)
XLOC_017082 NA coding downstream 7379 2213689 ~ 2214421 (+)
XLOC_017083 tmem200a coding downstream 21550 2227860 ~ 2241954 (+)
XLOC_017084 BX681416.1 coding downstream 55623 2261933 ~ 2266612 (+)
XLOC_017085 NA coding downstream 75314 2281624 ~ 2284813 (+)
XLOC_017086 akap7 coding downstream 254554 2460864 ~ 2479450 (+)
XLOC_017074 NA non-coding upstream 409768 1663759 ~ 1725048 (+)
XLOC_017070 NA non-coding upstream 779133 1354663 ~ 1355683 (+)
XLOC_017065 NA non-coding upstream 930942 1200292 ~ 1203874 (+)
XLOC_017061 NA non-coding upstream 1234436 896905 ~ 900380 (+)
XLOC_017056 NA non-coding upstream 1452524 681847 ~ 682292 (+)
XLOC_017087 NA non-coding downstream 274600 2480910 ~ 2481815 (+)
XLOC_017088 NA non-coding downstream 300590 2506900 ~ 2508095 (+)

Expression


Co-expression Network