XLOC_017085


Basic Information

Item Value
gene id XLOC_017085
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2281624 ~ 2284813 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036539
aatatttccagtagcttgttgaatctccgccatgaaggattaaagcagttctgaaggcaaaagggtactagtcaggtgtacctaataaagtgaccggtgaaaAGTATAACGCACTCAAACTCAGTTGCAGGCACAGTGATGTTTGTACTGTTCAGAAAGGAGTTTTGATTTATGACTCGTCTCGAATACtgacgtgtgtgtttgtgtgttctgttgaTGCAATTTGCTCttctgataacacacacacacacacactcctgagtTCAGAGGTCATTGAGTCAAGCATTAACCAGCAGCGGTAAATCCTCTAAATGATCACGGGTTTCAGCTTTACCTCCAGCTTTTTGTTTGGGTTTGTGTAGTGTTCCTCCAGTTTTCCCGCGGTGCAGGAGCTGATGAGTGCTGTGTTTCTGGACGAGCTGCCGGGATGGTTCCTGTGGACGGGGATCTTCCTCCCTGTGACTGCGCTACTGCTGCTCCTCATCGCTTTCTTCAGCGGCAAACTCACACACAAGCAGCAGCTGGCCGTGAGCGCAGACCCTCGACAAACAGCATATCTGCATTGTTTCAGACAGCAGACAGAGAAAAGGagacacacaccacacacacacaagaccaGATGAAGAGCTTTGGAGGAACACACACACGACCATACACAAACAAGCACAGCCGCAGAActctggagaaacacacacacatacacacagtagtGTACTACAGTACTTGAATGGATATGCTGTTGTgattcaacagttgctatggttacacaacaaccacaataaaaaaaatctgctgtggtgatcctacagttgctatggtaacaaccacAATAAATGATCTGTTATGGTaattatacagttgctatggtaacaactataaTAAATGGTCTgctgtggcgattctacagttgctatggtaacaattaCTACAATAAATGATGTTGTTATTATtctagttgctatggcaacaactACAATAAAtgctgttgtgattctacagttgctatggtaacaacacctACACCTCATAGtccgttgtggtgattctatagttgctatggtaacacaactatctCAATAAATGATCCGTTGTAgtgattgtacagttgctatagtaGCACCGACACTAAATAGtccattgtggtgattctatagttgatATGGTAACAACAACcacaataaaaaatatgctgtggtgatcctacagttgctatggtagcacaaCAACCACAATAAATGG
>TCONS_00034100
tgttgaTGCAATTTGCTCttctgataacacacacacacacacactcctgagtTCAGAGGTCATTGAGTCAAGCATTAACCAGCAGCGGTAAATCCTCTAAATGATCACGGGTTTCAGCTTTACCTCCAGCTTTTTGTTTGGGTTTGTGTAGTGTTCCTCCAGTTTTCCCGCGGTGCAGGAGCTGATGAGTGCTGTGTTTCTGGACGAGCTGCCGGGATGGTTCCTGTGGACGGGGATCTTCCTCCCTGTGACTGCGCTACTGCTGCTCCTCATCGCTTTCTTCAGCGGCAAACTCACACACACAGAGCAGCAGCTGGCCGTGAGCGCAGACCCTCGACAAACAGCATATCTGCATTGTTTCAGACAGCAGACAGAGAAAAGGagacacacaccacacacacacaagaccaGATGAAGAGCTTTGGAGGAACACACACACGACCATACACAAACAAGCACAGCCGCAGAActctggagaaacacacacacatacacacagtagtGTACTACAGTACTTGAATGGATATGCTGTTGTgattcaacagttgctatggttacacaacaaccacaataaaaaaaatctgctgtggtgatcctacagttgctatggtaacaaccacAATAAATGATCTGTTATGGTaattatacagttgctatggtaacaactataaTAAATGGTCTgctgtggcgattctacagttgctatggtaacaattaCTACAATAAATGATGTTGTTATTATtctagttgctatggcaacaactACAATAAAtgctgttgtgattctacagttgctatggtaacaacacctACACCTCATAGtccgttgtggtgattctatagttgctatggtaacacaactatctCAATAAATGATCCGTTGTAgtgattgtacagttgctatagtaGCACCGACACTAAATAGtccattgtggtgattctatagttgatATGGTAACAACAACcacaataaaaaatatgctgtggtgatcctacagttgctatggtagcacaaCAACCACAATAAATGG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005391 sodium molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036539 False 1239 lncRNA 0.43 2 2281624 2284813
TCONS_00034100 True 1031 lncRNA 0.43 2 2281835 2284813

Neighbor

gene id symbol gene type direction distance location
XLOC_017084 BX681416.1 coding upstream 15012 2261933 ~ 2266612 (+)
XLOC_017083 tmem200a coding upstream 39670 2227860 ~ 2241954 (+)
XLOC_017082 NA coding upstream 67203 2213689 ~ 2214421 (+)
XLOC_017081 l3mbtl3 coding upstream 75314 2134816 ~ 2206310 (+)
XLOC_017080 BX681416.2 coding upstream 135078 2099243 ~ 2146546 (+)
XLOC_017086 akap7 coding downstream 176051 2460864 ~ 2479450 (+)
XLOC_017087 NA coding downstream 196097 2480910 ~ 2481815 (+)
XLOC_017088 NA coding downstream 222087 2506900 ~ 2508095 (+)
XLOC_017089 il20ra coding downstream 304601 2589414 ~ 2609270 (+)
XLOC_017090 zgc:101562 coding downstream 358042 2642855 ~ 2647566 (+)
XLOC_017074 NA non-coding upstream 556576 1663759 ~ 1725048 (+)
XLOC_017070 NA non-coding upstream 925941 1354663 ~ 1355683 (+)
XLOC_017065 NA non-coding upstream 1077750 1200292 ~ 1203874 (+)
XLOC_017093 CABZ01027815.1 non-coding downstream 623738 2908551 ~ 2908665 (+)
XLOC_017097 NA non-coding downstream 1027849 3312662 ~ 3315637 (+)
XLOC_017099 LO018608.1 non-coding downstream 1118834 3403647 ~ 3416581 (+)

Expression


Co-expression Network