XLOC_017089 (il20ra)


Basic Information

Item Value
gene id XLOC_017089
gene name il20ra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2589414 ~ 2609270 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034102
AACACCTGAGCAGAAGAAGATGGACTTTGAGAGACGGCAGTGTGTTGAAAACTTCTCCAGCTTCATGTAGAGCAGAAAACACAGCTTAAAAAACAGAAAACCCGGCAGAATGCCAGCACTTCAGCGATGGATGTAGTTTTATCGATCTGTCTGTGTTTTCTCCTCAGAGCGCTGTCAGCGTCATCTGCTGATGGACCGCCTGAGCCGCGAGACGTCCACTTCTACTCGGAGAGTTTGAGGAACGTGGTGAAGTGGACGGCAGGACACGGATCTCCCAGCGACACCGTCTACACTGTGGAGTACGCCATTTACGGGGATGCGGATGAGAAGATACCCGAGCAGGTGAGATGGAGGCCGGTGGATCAGTGCATCTCCGTCTCTCAGACTGAATGTGACGTGTCTCAGGAGACGTTTGACCTGCGGGACGAGTACTTCGCAAGAGTCCGCGCTACCAGCAAACACGGGCAGTCCGTCTGGAGCGAGAGCATCGGCAGATTCAGACCACTGTCAGACACGGTTCTGGGAGCGCCGCTGGTGGATGTGACTGTGCGGCAAAACCACATCGACATCACCCTGAAGGGCCCATTCAGGTGGAGGATGAAGAGGATGAAGAAGGAGAAGTCGCTCTGGAAGATCATCCCAAACATGATCTATAAGGTGTCCGTCTTCAACAGCAGGAGCAATCGCACCGATGTCTTCAGGCTGACCAATGGGAGCTTGAGTCTGGGCGAGCTGGAGTTTTCCACCCAGTTCTGTGTGGTCGCTCAGGCCCAGTCTGAGTCTATCCCGCTGTCCTACATACCCAGCCAAAAGCAGTGCGTCCACACACCCAAAGGTACCGCCATAATCACCTTCATCAGCCCAAGAAGCATTCCTGTGCTTTCACTTTCACATCCAACCGGTTTGATCAGTGTGAGCGACATGACAGGTCGAGGAAACCTTTGAATTCTTATCATCGGTGCTGGTGTTTTCCCAGCGTGCTCTGAGCTGGACTTCCTCATGCCTGAGAGCTGGTTTACAGTCTTCATGTGTGTGCTGGGTGTTAATGTGTAAACTGCTGCGCCCTGTTGCACGCAAGCcctcaagctaaaaaaaaaa
>TCONS_00034103
AACACCTGAGCAGAAGAAGATGGACTTTGAGAGACGGCAGTGTGTTGAAAACTTCTCCAGCTTCATGTAGAGCAGAAAACACAGCTTAAAAAACAGAAAACCCGGCAGAATGCCAGCACTTCAGCGATGGATGTAGTTTTATCGATCTGTCTGTGTTTTCTCCTCAGAGCGCTGTCAGCGTCATCTGCTGATGGACCGCCTGAGCCGCGAGACGTCCACTTCTACTCGGAGAGTTTGAGGAACGTGGTGAAGTGGACGGCAGGACACGGATCTCCCAGCGACACCGTCTACACTGTGGAGTACGCCATTTACGGGGATGCGGATGAGAAGATACCCGAGCAGGTGAGATGGAGGCCGGTGGATCAGTGCATCTCCGTCTCTCAGACTGAATGTGACGTGTCTCAGGAGACGTTTGACCTGCGGGACGAGTACTTCGCAAGAGTCCGCGCTACCAGCAAACACGGGCAGTCCGTCTGGAGCGAGAGCATCGGCAGATTCAGACCACTGTCAGACACGGTTCTGGGAGCGCCGCTGGTGGATGTGACTGTGCGGCAAAACCACATCGACATCACCCTGAAGGGCCCATTCAGGTGGAGGATGAAGAGGATGAAGAAGGAGAAGTCGCTCTGGAAGATCATCCCAAACATGATCTATAAGGTGTCCGTCTTCAACAGCAGGAGCAATCGCACCGATGTCTTCAGGCTGACCAATGGGAGCTTGAGTCTGGGCGAGCTGGAGTTTTCCACCCAGTTCTGTGTGGTCGCTCAGGCCCAGTCTGAGTCTATCCCGCTGTCCTACATACCCAGCCAAAAGCAGTGCGTCCACACACCCAAAGACCCGTTCAGAGATCAGCTGCTGGCTGCCATGCTGGGCGGTGTGCTGCCGTCTGCCCTCTGTCTGTGTGTGATGGCTGTGCTCGGGGCTCTCATCCGCTGCTACATCACTGACCACAGACAGAAACTGCCCAAGAGCACACAGCTGGTTCAACTGAGCGAAAAGCTTCAAACGTTCAAACCAGAGGTTCCTCAGACGGTCATCTTTAACATCAAGCTGGATGATTCCTCAGTGCTGCGTCCTGCTCTGCCGCTGCCGTTCTCTGTTGAAGACTCTTCAGAGGAGCCTGTGAACGCCGTCCCGCAGCCGGCCGGATCATACGCTCAGCAGCAGCCTCTGCCCCCGGCCGGGCCCGCTTCCCTTTCAGGAGATCTGCAGGACGGAGATTCGCTGAGTCTGGACTCTGAGCCGCTAGCAGACCATCACAGCGAGGCTGGAGATTACGCTTTCGTCATCCGGGCTAAGGTTGACCACAGTGAAGTCGAGGTCAGCCAGTACAGGACACAAGGCCACACGGCAGACCCGCAAGACCACCATATTGAAGAGGAGGCGCAGATTTTCGTGGACTGGAGCCCAGAGTCTGGAGAACTGAAAATCCCTCTCATGGGTTTGCTGGGTCTGGAGGACGAGTCGGGGGTCCAGACTGAAGCGGTTTCACTCCTGCCCAACCTGATCCTGACGCAGACCTCGGTGGACGGCTGCGAACAGGAGGACGATTTCAGCATGATGGAGCGAAACTGGGGCCTCGTAATCCACTCCAGCCCTGAATGAACACCGTAACGCCACTGAAGCCATGTCCACACCCTCATGAGCACTTCACAGAGTTCCCctcatttgcagattattttgcttgttttaaggaaaacactCTTATtactggcatattatttctgaaaacaggacagtatgttttgctcgtctagaaaaagcttcttgatttaagactttttagatatctggactagaaacaagactaaaactaAGTAAGAAGTGTGAGGAAATCACCTTTACGGTGTACGAATGAGGCGATATAATGAAGGATTGTGATAAATAATGAAGGATTCTCAATAGACCGTTTCTGCTTGAGCTGACTGCGAATATGAGACTCAAGCAAAGACCTTCAGCTTCAGTATTACACATCATTTACTGAAAAAAGACGTCCAAAACCTGAAGCGTTCAAAGCTGCTGTGAAGCTCAGCTTCGTTGGCTTTTAGTTGCGGAAGTGTGTTTTGACAGCAGGGGTCGCTGTTCCAGCAGATGAAACACACAATATTTGATTGAACACCTCTATTTTGCACAAAGAATACTGAAATATCTGTGATGGTCAAACCTTTGCTGCTTGCTTAGAGCCATATCTCTGTGACTGTCAGTGATTTTTCTAATGGAAATGCCCTTAATACCTTAATAGTGGACAAATTAATCACAGTTCATGAACATTAGAAACACGAGACAGCGCAACACTACTGAACAAACCTCTGTTTTTATCCACGGATGAAGTTtaaaatggtgtgtgtgtgtgttgaacgatgtaaaaaaaataaagaattagtTTGAGTCTTGGAAGGAGTTATTTTATACAGTGTTGTGTGTTTAAACTACACCAAATGCTTACTTTTATATTGAAGTATTAATGTATGTGGTTGTGAGTGAATTATGTGGACGTTTCTGTGATGATGATTGTGAAAATAAGAGCTTAACTCTTTCAGCTGCAggtttacttctattttaatcaCTACATGTCTGTCAGTTTTTGATCCGACAAAACAATAAATCTTCGAA

Function

symbol description
il20ra Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human IL20RA (interleukin 20 receptor subunit alpha).

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0045603 positive regulation of endothelial cell differentiation biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0060284 regulation of cell development biological_process
GO:0031175 neuron projection development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-040724-249 Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human IL20RA (interleukin 20 receptor subunit alpha).

Ensembl:

ensembl_id ENSDARG00000032571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034102 False 1098 lncRNA 0.53 5 2589414 2604405
TCONS_00034103 True 2613 mRNA 0.49 7 2589414 2609270

Neighbor

gene id symbol gene type direction distance location
XLOC_017088 NA coding upstream 81319 2506900 ~ 2508095 (+)
XLOC_017087 NA coding upstream 107599 2480910 ~ 2481815 (+)
XLOC_017086 akap7 coding upstream 109964 2460864 ~ 2479450 (+)
XLOC_017085 NA coding upstream 304601 2281624 ~ 2284813 (+)
XLOC_017084 BX681416.1 coding upstream 322802 2261933 ~ 2266612 (+)
XLOC_017090 zgc:101562 coding downstream 33585 2642855 ~ 2647566 (+)
XLOC_017091 slc35a1 coding downstream 59747 2669017 ~ 2679683 (+)
XLOC_017092 syncrip coding downstream 122166 2731436 ~ 2745385 (+)
XLOC_017093 CABZ01027815.1 coding downstream 299281 2908551 ~ 2908665 (+)
XLOC_017094 amd1 coding downstream 340735 2950005 ~ 2978968 (+)
XLOC_017082 NA non-coding upstream 374993 2213689 ~ 2214421 (+)
XLOC_017097 NA non-coding downstream 703392 3312662 ~ 3315637 (+)
XLOC_017099 LO018608.1 non-coding downstream 794377 3403647 ~ 3416581 (+)
XLOC_017107 CABZ01067980.1 non-coding downstream 1695187 4304457 ~ 4307735 (+)
XLOC_017108 CABZ01067979.1 non-coding downstream 1700251 4309521 ~ 4318473 (+)

Expression


Co-expression Network