XLOC_017097


Basic Information

Item Value
gene id XLOC_017097
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3312662 ~ 3315637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036541
gaatgagaataGCTTGAGAGTGAGTACATGCTTCGTAATATTAGATTTTTGGGTGTGCTATCTCTTTAATTGGTTGGCTTTTGTACAcgaaattacaattacaaaacaTACCACCACCTTAAACGTACTTACACTGATTAAAAGTTATGTTAtggttacttgtttttttttttcaaagaagaagagacaaaacaaatcaaattgtattcacatttattttgcttttagtgtgctcacaaaaatgtaaacaccTTCAGCAGCGAAATTCCATATGAAACTGTGTAAGCGAAGTTACATTCAAACTCAAAGTCAAATGTAAACGCTTCCCCAATATTTACAAAAGAGACCAGATGCCAACTCTGCATCTGATCGTTTCCCAAATTTTGTCAGACAACCTGTGAAAAAGGATTATCTGCTGTAATCAGTTCAAATTACACTAGAAACAGGAACCGGAACATGCGTCACAGCTTGACTAGAGATAAAAAATAATGCTTCAATGCTCTGAAAACCATGTAGAAATCCAAACGTGCTGACAGAAGAGCTGCATGTGCTTTTTGAGATCAAGATCTTTATACAGTAACACAGTTAAACGCCCATTCTGTACATACTTTATGAGCTCACAGAACCACTACAAAGCATGTGTAAATTGTTTTCCTACTGAACTCATTGACCGTTACAGGGTTCCCAGggtctttttttcttcttatatattttgttaaaaaaatcatttagtaTTGTTAATTGTAGTGCATGTTTTCGTGATCATTCTATTTTAAACTACTCGTCAGTGCACAGCaaaaatcctctgagtaaaatttTGTTTAGTTCACCGTGtaatttggtccctctctaaagctgcgtaactTTTCCTCAATTTATAGATCTTTTTCAttgctgctgcatggagggcgccatagcgaccagcgtcttccggtagaatgctaaaaacttccgttcacagcgtgtacaactggtaatttgcgctccgaaaatgggtttcaataacgtttttaatggacaacagagtgtttttgtgacacgcaacttagaaatgtgtctgttaaagccgttataatctgtcacatgtggttcaagcgcgtcagaaatacgagaaaaacgttctcctagttcacgtgtctgccgtcagaaatacagtgtgtgttcacggcctgtcagctgttagctcagcggctctttaagacacagagagagagagagcaaaccagagtaacgttactggcatgaaacttaacaggtatgaaagtcgtgcaatttacaaaaatgaccaataaaagtctgttattgatcctctgctggctgatttgctg

Function

GO:

id name namespace
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0090085 regulation of protein deubiquitination biological_process
GO:0044380 protein localization to cytoskeleton biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036541 True 1328 lncRNA 0.38 2 3312662 3315637

Neighbor

gene id symbol gene type direction distance location
XLOC_017096 ndufaf7 coding upstream 24573 3277620 ~ 3288089 (+)
XLOC_017095 CEP170B coding upstream 181781 3108597 ~ 3130881 (+)
XLOC_017094 amd1 coding upstream 333694 2950005 ~ 2978968 (+)
XLOC_017093 CABZ01027815.1 coding upstream 403997 2908551 ~ 2908665 (+)
XLOC_017092 syncrip coding upstream 567277 2731436 ~ 2745385 (+)
XLOC_017098 mfsd4b coding downstream 23611 3339248 ~ 3345526 (+)
XLOC_017099 LO018608.1 coding downstream 88010 3403647 ~ 3416581 (+)
XLOC_017100 C20H1orf198 coding downstream 600769 3916406 ~ 3927624 (+)
XLOC_017101 clec11a coding downstream 618879 3934516 ~ 3940286 (+)
XLOC_017102 arv1 coding downstream 682047 3997684 ~ 4011994 (+)
XLOC_017088 NA non-coding upstream 804567 2506900 ~ 2508095 (+)
XLOC_017087 NA non-coding upstream 830847 2480910 ~ 2481815 (+)
XLOC_017085 NA non-coding upstream 1027849 2281624 ~ 2284813 (+)
XLOC_017084 BX681416.1 non-coding upstream 1046050 2261933 ~ 2266612 (+)
XLOC_017107 CABZ01067980.1 non-coding downstream 988820 4304457 ~ 4307735 (+)
XLOC_017108 CABZ01067979.1 non-coding downstream 993884 4309521 ~ 4318473 (+)
XLOC_017113 BX649499.2 non-coding downstream 1735552 5051189 ~ 5057952 (+)
XLOC_017116 dre-mir-7146 non-coding downstream 1759287 5074924 ~ 5075054 (+)

Expression


Co-expression Network