XLOC_017114 (si:dkey-60a16.1)


Basic Information

Item Value
gene id XLOC_017114
gene name si:dkey-60a16.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 5065268 ~ 5070324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034143
GAGTAAGAGGAAAATAGTACAGAAGAGGGCAGTAATGATACAAACAGGATGCCAGCTGCCGTTAAAACCTTAAGAAGAAGATGAAAAAGGACACTAGTTTACTTCCGCCGATCGTACTAAATGTGTAAATGCTTCATATCTAAGACCATAGAataccttaaagggactttgttcaTATAGTAAAGCGTGTTTATGTTCGCGTCGAGTACATAACCATGACGTGTAAGCGTTCGAAAACGACGTTTCAAAGACGGGAGCGCAGTAGCAAGTTCCACTGCTGTGTCCCGCAATGTACAGCATCTTCCAAGTTCAACTCAGTCCTCAGTTTCCACACGTTTCCCAAAGACAAAGATGCGCAGGAGAGGTGGGTGGTTAATATTCGACGGGACAATTTTAAAGTTACCCCAAAGAAACGGGTGTGTAGCCGACATTTCAAATGCAGCGACCTGATCGAGCCTTTAACTTCAGTTGGACACAGGCGTTTGGAGAAAGGAGCCATCCCGGTGCTTTTTCACTGGAACAACTTCACCGCCCCGGCCGAACAGCCTGGAGTTTTGGAAAAGATAAAAACAGACCGACTgcatagtgatgatgatgatgatgatgacccTTCTATGGATGCGATTGCTCACACTTCACACCTTGATTCCATCCCCACCTCTGCAGCTCGAGACCACACTGAGGATCTACTTGTGGAAATTGCTTGTCTCCGAAAACAGATTGAGGAGATTTCCCTGAGTAGCAGGTTTTGTTTGGAGAGGTTCGCCGCATCCGATGATGACATTAGGTTTTACACCAGGTTTGCGACTCATGCCCACCTAATGGCCTTTTGGAGGTTGGTTGAGCCAGCAGCTGGCAAGGTTGTGCAAATGAGCAGAGCACGGGCTGCCGCCAACATAGATGAGCTCCCTCACACTGCCGGTGCAACGTCTCTTCAACCCATTGATGAGTTTTTCCTGTTCATGACCTTCCTATCATTGGGCCTGATGCAGAGGGATTTGGCCCACAGATTCAGAATCCACCAATCCGCTGTGAGCCGCATCATCAACACATGGGCTACATTTCTGGATATGGTCCTCAGAGCTGTGGACATTTGGCTGGACAAGAAGACAGTCAAAGCTCACATGCCTGCCGTTTTCCAGCATTACACTGACACCCAGGTGATTTTGTACTGTGCTGAACTGCGTTGCCAGATACCAAACCCTCATCGGAGTCACTTACTTTCTACCTACAAACCTCAGTGGAATTTTAAAGGGTTGATTGGGATGGCTCCTCACGGGGCTGTAACATTCGTTTCATCCCTTTACAAGGGCACCATCAGTGATCCAGAGATTGTAAAGCACTCTGGTGTCGAGGCTCTTGTAAATCCAAAAATGGCAATAATGGTGGATGAGGGTTTCCTGGTTGAAAACTGTGTGTCCTGCAAAGTCCACGTACCTAGCATCCTGTCAAAGAGGGCACAAATGTCTGGGTCAGAGGTCAGGAAAATGCAGTCCCTTGCAAGATTGAGACTCCATGTTGAGCAGCTAATTGGAAGGGTGAAGGAGAACAAGATATTTAGCACGGTAATCCCTCTTTCACTTACTGGCAGCGTCAATCAACTGTACTCGGTTGTCTGTCATTTGGTCAACTACCAAAATGGACCCTTAGTTACTGGCCTGACTAGATGAAGGATTATAGAAATGGATGGTCTCTAAATGTATTTAGCTACTGTCATCACTTGAGTTGAATAATTTTCTTGTTTTataccctgcagaaaaatccagtttaaaccagcctaggctggttggctggttttagctggtcgaccaggctggttttcgaggggttttggccatttccaggctggtttccagccattttcagcctggtcttagctggtcaggctggaaactgaccagctaaatccagctaaaaccagcttgaccagcctggtttaagctggacatagctggttttggctgggctcccagcctggctaggctggtcaagctggttttaactggtcagcttccagcctgactagctaagaccaggctggaaatggctggaaaccagcctggaaatggccaaaacccctcgaAAACCAGCTACCTCGAAAACCAACTACTGGATTTTTCAGTAGTTCAGGgaaagcttttttttgtttttcattgtaCATAATTTGACAATTTTCACGTATaagttgtgaaaaaaaaaagactttatttgGATGACCAGAAATAAAAAGCcatgtttgttttactgtttatgagggctgtgcaatatgaagATAtcatatgaacaaaataaaaaaacagtttcatATCATGCTCTGTCGTTTCTATCATGACCATGCACAAAATACATCGATTACGAGAATACGTTTTCATAATTTATATGTCCGCAATATTATATGGCATTATGGGGACGCTGGCAGAAACTTGAATAAGAGCCTGC

Function

symbol description
si:dkey-60a16.1 Predicted to enable DNA binding activity and metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-244 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000037073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034143 True 2439 mRNA 0.45 3 5065268 5070324

Neighbor

gene id symbol gene type direction distance location
XLOC_017113 BX649499.2 coding upstream 7316 5051189 ~ 5057952 (+)
XLOC_017112 tmem242 coding upstream 168913 4885298 ~ 4896355 (+)
XLOC_017111 lgals8a coding upstream 251170 4793516 ~ 4814098 (+)
XLOC_017110 im:7142702 coding upstream 610474 4392687 ~ 4454794 (+)
XLOC_017109 tiam2b coding upstream 720161 4334008 ~ 4345107 (+)
XLOC_017115 ccnk coding downstream 3794 5074118 ~ 5094423 (+)
XLOC_017116 dre-mir-7146 coding downstream 4600 5074924 ~ 5075054 (+)
XLOC_017117 cyp46a1.1 coding downstream 36244 5106568 ~ 5120937 (+)
XLOC_017118 zgc:123299 coding downstream 61814 5132138 ~ 5145333 (+)
XLOC_017119 CU571247.1 coding downstream 353638 5423962 ~ 5424096 (+)
XLOC_017108 CABZ01067979.1 non-coding upstream 746795 4309521 ~ 4318473 (+)
XLOC_017107 CABZ01067980.1 non-coding upstream 757533 4304457 ~ 4307735 (+)
XLOC_017099 LO018608.1 non-coding upstream 1648687 3403647 ~ 3416581 (+)
XLOC_017097 NA non-coding upstream 1749631 3312662 ~ 3315637 (+)
XLOC_017124 NA non-coding downstream 1142486 6212810 ~ 6214789 (+)
XLOC_017125 CABZ01086587.1 non-coding downstream 1264972 6335296 ~ 6335411 (+)
XLOC_017131 CR788301.1 non-coding downstream 1849424 6919748 ~ 6919864 (+)

Expression


Co-expression Network