XLOC_017124


Basic Information

Item Value
gene id XLOC_017124
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6212810 ~ 6214789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036542
atgaagacgaggaggaggatgatgaggaagaggaggacgACAGTGAGTATAAAGATAAGGATGAGCTTAAAAAAaggaatatatacatttttttttaatcaatggtACAAATTATCCTATTGTATAAACAATTTCAGTCAAAAGCAAACTATACTGTAGCTCTTCTTGACTGAATATTTAACTAtgggccatgttttttttttctctccacagCGTCAAAGCCTAAATTCTTTACAGCATCACAGTCCAGAAGTTATAAACAAACATGGACACATCAAGCCTTCTCAACATCAGAGTCAAAATCGAGGAGCTTCAGAGAATCAGGGTCAAAACCTGGACCCTTCCCTAAAAGGGAGTTAAAATCTAGGAGCTTCAGGGAACCAGAGTTGCAATCTAGACCCTCGTCAATAACAGAAACGGGGTCCAGGGGTTTGATAAAACCACGGTTTGGCTCTATACCGTCCAAACTGTCACGTGACAGATACTACACACAGAAAGACTAAAGGCTAAGAacatcctcagtaaaaaaaataaataaataaaaaaaacctacCTAGTTTTTAGCTCTGTATACCATAAGACTATGTGGAAGGGCAAAGAGCTTTTGATTCTAGGGGTAATTTATAAACTATAGATGAGCATATGAAAACCGTTTTCATATAGGCCTCATTCCTACTAGATATTAaaaaaagcagtgtttctcaaccaagttcccggaggaccaccagctctgcacattatCCCCTTAACCAACCACACCTGATTCATATAATCagttcattagcagagactgaaagacctgtaatgggtgtgacagacaaagggaACATCCAAaccatgcagtgttggtggtcctccaggaacttggTTGAGAAAGTACTCAAAGAGTAAACCATATTATCTGAACTAATGATACTGTATTGTTGCTTGCCATAGTCTTGATGCATTATGGGAAGAAATATCAGTGATCAATATGTTTCTGTGTTTTAAATGTTTggtaactatttaaaaaataattacatacaaATAGAAACATCTAGTAGAATTTTGAAGTATACATGAATTTTATGTCTATATAGTGAAATTTTAGAGGTAATTTCAAAGCCTATCAACTATCTGGATATCCCACCTCAGGATGGTATGCGTTTTGGTATTTTGTGTCAAAGTATTTTGTGGTATACAGGTACAATTATTAGCTTAGCACATAAATGctaatcaaaatacattttaaattcactGTTTACTTCAGTACTTACTTGAAAAATAATGGTATTTCATTTAACCGTACATAGTAAAAAATATCCTGAAGCGAAAGTGCTTGAACAGATCTGAAAAAGTAGAGATATTCATGCTTGATTTTCACAGCTCATAAAGGATAGAGAGTAAAACAGGATTCTCAGAGAGGATTGTGCTCAATCAGCAAGTACTGCATTTTCCTAAGAAATGTTGTCGGGAAAAAACTGTGTAACTGCTGCTTATGCCAAGGTAATGGAATTGTACAGGACCTGTGGGGAAAGCAAGATCAACAACAAGCTATGAAAATTGAGTTTTTATGCTATACACTTAAGTTAATCTAAAGATTGTATTCCAGTCACGTGCTGCAGTGCATTTCAGTAAGTAAGGGATTTAAAGGCATTACATGACaacaatgtgttaaaaatattacatttacccAAGACTACTAACTTACTGAGTATTTTCTTTGTTGTTGAAGTTTTGCGATCCAATGACAGCATTGCCAAAACATATCCTGTTACACACAGATCCACGAAAACAACTAAAATGCTGTATCATGCATGTCATGCCAGTAGATGGCGATGTCAGTTTATAAAGAAACAGCACGAATGGTCCTGCATCGTGGTGCCATTGTTGTTTTTGTAGTCTTTGTGGATGATTTTTCAAAAGGCAACATTACAATTTTCAATTTGCTCTTTACCAAAATGCAGaatatatgtaaattaataaatgcattgttaacAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0007009 plasma membrane organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0033292 T-tubule organization biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005882 intermediate filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0031430 M band cellular_component
GO:0030315 T-tubule cellular_component
GO:0030054 cell junction cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036542 True 1980 lncRNA 0.36 1 6212810 6214789

Neighbor

gene id symbol gene type direction distance location
XLOC_017123 ttr coding upstream 54868 6142433 ~ 6157942 (+)
XLOC_017122 tshr coding upstream 132887 6035427 ~ 6079923 (+)
XLOC_017121 cep128 coding upstream 202674 5985329 ~ 6010136 (+)
XLOC_017120 nrxn3b coding upstream 247503 5563042 ~ 5965307 (+)
XLOC_017119 CU571247.1 coding upstream 788714 5423962 ~ 5424096 (+)
XLOC_017125 CABZ01086587.1 coding downstream 120507 6335296 ~ 6335411 (+)
XLOC_017126 mep1b coding downstream 278859 6493648 ~ 6516539 (+)
XLOC_017127 si:ch211-191a24.4 coding downstream 318471 6533260 ~ 6540933 (+)
XLOC_017128 tns3.1 coding downstream 328885 6543674 ~ 6576809 (+)
XLOC_017129 tns3.2 coding downstream 375431 6590220 ~ 6666641 (+)
XLOC_017116 dre-mir-7146 non-coding upstream 1137756 5074924 ~ 5075054 (+)
XLOC_017113 BX649499.2 non-coding upstream 1154858 5051189 ~ 5057952 (+)
XLOC_017108 CABZ01067979.1 non-coding upstream 1894337 4309521 ~ 4318473 (+)
XLOC_017107 CABZ01067980.1 non-coding upstream 1905075 4304457 ~ 4307735 (+)
XLOC_017131 CR788301.1 non-coding downstream 704959 6919748 ~ 6919864 (+)
XLOC_017136 NA non-coding downstream 1112702 7327491 ~ 7351711 (+)
XLOC_017137 FO834840.1 non-coding downstream 1126289 7341078 ~ 7341194 (+)
XLOC_017139 NA non-coding downstream 1318927 7533716 ~ 7540142 (+)

Expression


Co-expression Network