XLOC_017127 (si:ch211-191a24.4)


Basic Information

Item Value
gene id XLOC_017127
gene name si:ch211-191a24.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6533260 ~ 6540933 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034162
ATTGGTTGGACCTGCGGAACGATTACGCCCCTTTCTATATGTAGTTCCTCAAGCTGGAGAAAAACTGCTTGTTCAGCTCTTATCTGGTAATCATCGCGAGATTTCACTGACAGGGTTGGTCAAAATCTCATGTCGGCGGAAAAAAAGTGGAGTTTTGATTAGGAAAACCAAAACAAATGTGAGCAGCGACCTTTATAAACAACAATGAGCCAGCCACCCAGAAACCAGcgtacacacagagagagaaatggTGAAGAGAGAAGACAAAATGGTGAAAAGAGAGACAGAGACCCCCGCAGTCAACAGGACCGTCCTAGTGACCGACGACCAGGCAATGAAAGAACCAGATCATCTGGCCAGTCCTCATACCAAACCAGAGGGTCTCAGAGACCTGCGAGGAGCACTTCTCAAAGGGAGCACATGGAGTCCAAGTGCACTTACATCTGTTCTAGGAGAGgtaTTGTGTTGATTTGCACCATCCTGACCAATGCCTTGGTGCTCATCTGCATAGTGGCTGCCCACATGTCACAGCTGGGCATGTCTGCGATGGGAATGGGTGGAACAAGCTTCATTGATGCTATCATTCCTTTCGAGGGGACGGAGCTGCAGACGGTGCGTAATCTTGACATGCAGTACGGACAAATGAGAGCACCTGGAGTCTATGGAGGCGTGGCCTTCAGCCTCACTTTCGGTGCTCTTTCGCTCCTATTCGTAGTTTCCAGTGGCAAACCCGCTCACGTGCTTCCACGGAAGCTCCTGATTGGACAGTTTGCATTCCAGATCATTGGTGCAGTGGCTTACGTGATTGCGGTGGGTTTGTACCTGCACCTTGTGATCTCTGTGAACTCAACCGACGTGTGCATTATGCGCGAACGACTGTACGCTCGTAACGGATATACC
>TCONS_00034163
ATTGGTTGGACCTGCGGAACGATTACGCCCCTTTCTATATGTAGTTCCTCAAGCTGGAGAAAAACTGCTTGTTCAGCTCTTATCTGCAATGAGCCAGCCACCCAGAAACCAGcgtacacacagagagagaaatggTGAAGAGAGAAGACAAAATGGTGAAAAGAGAGACAGAGACCCCCGCAGTCAACAGGACCGTCCTAGTGACCGACGACCAGGCAATGAAAGAACCAGATCATCTGGCCAGTCCTCATACCAAACCAGAGGGTCTCAGAGACCTGCGAGGAGCACTTCTCAAAGGGAGCACATGGAGTCCAAGTGCACTTACATCTGTTCTAGGAGAGgtaTTGTGTTGATTTGCACCATCCTGACCAATGCCTTGGTGCTCATCTGCATAGTGGCTGCCCACATGTCACAGCTGGGCATGTCTGCGATGGGAATGGGTGGAACAAGCTTCATTGATGCTATCATTCCTTTCGAGGGGACGGAGCTGCAGACGGTGCGTAATCTTGACATGCAGTACGGACAAATGAGAGCACCTGGAGTCTATGGAGGCGTGGCCTTCAGCCTCACTTTCGGTGCTCTTTCGCTCCTATTCGTAGTTTCCAGTGGCAAACCCGCTCACGTGCTTCCACGGAAGCTCCTGATTGGACAGTTTGCATTCCAGATCATTGGTGCAGTGGCTTACGTGATTGCGGTGGGTTTGTACCTGCACCTTGTGATCTCTGTGAACTCAACCGACGTGTGCATTATGCGCGAACGACTGTACGCTCGTAACGGATATACCTGGATGAATTGTAGTGTGAATGGGGGGGACGCATCTGTAGCACTGTTTGGAATCATAACCGCAATTCTGTATGCCGTTGGTGCTGTTTTTACTGCCAAAACAATCCGGGATGTCGATCGTTTTCTTAAGGAGCGTGATCACTTCGAAGCTGAACAAAGAGAAGAACCCAGAGGTCCTCAGACGAGACCTCTTAATTCTGACATTTACATCTGAGTTGTGGAGCATAAGCACTATGGACTGTACATAAActgattttaattttgttttatgttttttaggaTTCTTTTTTACTTTTAGGACTTTTTATGCGTATTAGAATGCAATTGATCTCAGGATTTAGTTAttaatatagttttgtttttaaaaatgttttaattaataaatattgaataCAGT
>TCONS_00034164
AAACAATGCTCTTCCCTCGCACTTGCGTATGTTTTGATCGAAGACAGAGCCACTTTTGTTGAGGAGACAGTCCGTGCTCTCAGTCTGTCCTGACCTTTGCTTCTGTTATCGCGTATTGGGTCGTTCAAACTGTGAATAGGCGATCACACAGATAACAAAGTTTGACAGTTCGTTTAGGGACTGCCGCGTCTGATACTTGTATTTTTCACCTGTCTTCAAACCCCAGGTAATCATCGCGAGATTTCACTGACAGGGTTGGTCAAAATCTCATGTCGGCGGAAAAAAAGTGGAGTTTTGATTAGGAAAACCAAAACAAATGTGAGCAGCGACCTTTATAAACAACAATGAGCCAGCCACCCAGAAACCAGcgtacacacagagagagaaatggTGAAGAGAGAAGACAAAATGGTGAAAAGAGAGACAGAGACCCCCGCAGTCAACAGGACCGTCCTAGTGACCGACGACCAGGCAATGAAAGAACCAGATCATCTGGCCAGTCCTCATACCAAACCAGAGGGTCTCAGAGACCTGCGAGGAGCACTTCTCAAAGGGAGCACATGGAGTCCAAGTGCACTTACATCTGTTCTAGGAGAGgtaTTGTGTTGATTTGCACCATCCTGACCAATGCCTTGGTGCTCATCTGCATAGTGGCTGCCCACATGTCACAGCTGGGCATGTCTGCGATGGGAATGGGTGGAACAAGCTTCATTGATGCTATCATTCCTTTCGAGGGGACGGAGCTGCAGACGGTGCGTAATCTTGACATGCAGTACGGACAAATGAGAGCACCTGGAGTCTATGGAGGCGTGGCCTTCAGCCTCACTTTCGGTGCTCTTTCGCTCCTATTCGTAGTTTCCAGTGGCAAACCCGCTCACGTGCTTCCACGGAAGCTCCTGATTGGACAGTTTGCATTCCAGATCATTGGTGCAGTGGCTTACGTGATTGCGGTGGGTTTGTACCTGCACCTTGTGATCTCTGTGAACTCAACCGACGTGTGCATTATGCGCGAACGACTGTACGCTCGTAACGGATATACCTGGATGAATTGTAGTGTGAATGGGGGGGACGCATCTGTAGCACTGTTTGGAATCATAACCGCAATTCTGTATGCCGTTGGTGCTGTTTTTACTGCCAAAACAATCCGGGATGTCGATCGTTTTCTTAAGGAGCGTGATCACTTCGAAGCTGAACAAAGAGAAGAACCCAGAGGTCCTCAGACGAGACCTCTTAATTCTGACATTTACATCTGAGTTGTGGAGCATAAGCACTATGGACTGTACATAAActgattttaattttgttttatgttttttaggaTTCTTTTTTACTTTTAGGACTTTTTATGCGTATTAGAATGCAATTGATCTCAGGATTTAGTTAttaatatagttttgtttttaaaaatgttttaattaataaatattgaataCAGTACAAAAA
>TCONS_00034165
AAATCTCATGTCGGCGGAAAAAAAGTGGAGTTTTGATTAGGAAAACCAAAACAAATGTGAGCAGCGACCTTTATAAACAATCAGCTGAAACGAGATACAAGAGTGAGTGAAACTCATTCACCGATACTCAACCACAGGTTACACAATGAGCCAGCCACCCAGAAACCAGcgtacacacagagagagaaatggTGAAGAGAGAAGACAAAATGGTGAAAAGAGAGACAGAGACCCCCGCAGTCAACAGGACCGTCCTAGTGACCGACGACCAGGCAATGAAAGAACCAGATCATCTGGCCAGTCCTCATACCAAACCAGAGGGTCTCAGAGACCTGCGAGGAGCACTTCTCAAAGGGAGCACATGGAGTCCAAGTGCACTTACATCTGTTCTAGGAGAGgtaTTGTGTTGATTTGCACCATCCTGACCAATGCCTTGGTGCTCATCTGCATAGTGGCTGCCCACATGTCACAGCTGGGCATGTCTGCGATGGGAATGGGTGGAACAAGCTTCATTGATGCTATCATTCCTTTCGAGGGGACGGAGCTGCAGACGGTGCGTAATCTTGACATGCAGTACGGACAAATGAGAGCACCTGGAGTCTATGGAGGCGTGGCCTTCAGCCTCACTTTCGGTGCTCTTTCGCTCCTATTCGTAGTTTCCAGTGGCAAACCCGCTCACGTGCTTCCACGGAAGCTCCTGATTGGACAGTTTGCATTCCAGATCATTGGTGCAGTGGCTTACGTGATTGCGGTGGGTTTGTACCTGCACCTTGTGATCTCTGTGAACTCAACCGACGTGTGCATTATGCGCGAACGACTGTACGCTCGTAACGGATATACCTGGATGA

Function

symbol description
si:ch211-191a24.4 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MARVELD3 (MARVEL domain containing 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4489 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MARVELD3 (MARVEL domain containing 3).

Ensembl:

ensembl_id ENSDARG00000037528

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034162 False 900 mRNA 0.50 5 6533260 6540530
TCONS_00034163 False 1180 mRNA 0.46 4 6533260 6540926
TCONS_00034164 False 1443 mRNA 0.45 4 6535176 6540933
TCONS_00034165 True 848 mRNA 0.50 5 6535438 6540537

Neighbor

gene id symbol gene type direction distance location
XLOC_017126 mep1b coding upstream 16721 6493648 ~ 6516539 (+)
XLOC_017125 CABZ01086587.1 coding upstream 197849 6335296 ~ 6335411 (+)
XLOC_017124 NA coding upstream 318471 6212810 ~ 6214789 (+)
XLOC_017123 ttr coding upstream 375318 6142433 ~ 6157942 (+)
XLOC_017122 tshr coding upstream 453337 6035427 ~ 6079923 (+)
XLOC_017128 tns3.1 coding downstream 2741 6543674 ~ 6576809 (+)
XLOC_017129 tns3.2 coding downstream 49287 6590220 ~ 6666641 (+)
XLOC_017130 igfbp3 coding downstream 215314 6756247 ~ 6804237 (+)
XLOC_017131 CR788301.1 coding downstream 378815 6919748 ~ 6919864 (+)
XLOC_017132 ftr85 coding downstream 543221 7084154 ~ 7104637 (+)
XLOC_017119 CU571247.1 non-coding upstream 1109164 5423962 ~ 5424096 (+)
XLOC_017116 dre-mir-7146 non-coding upstream 1458206 5074924 ~ 5075054 (+)
XLOC_017113 BX649499.2 non-coding upstream 1475308 5051189 ~ 5057952 (+)
XLOC_017136 NA non-coding downstream 786558 7327491 ~ 7351711 (+)
XLOC_017137 FO834840.1 non-coding downstream 800145 7341078 ~ 7341194 (+)
XLOC_017139 NA non-coding downstream 992783 7533716 ~ 7540142 (+)
XLOC_017142 NA non-coding downstream 1361023 7901956 ~ 7902288 (+)

Expression


Co-expression Network