XLOC_017155 (si:dkey-174m14.3)


Basic Information

Item Value
gene id XLOC_017155
gene name si:dkey-174m14.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9355912 ~ 9421263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034200
CAGCTTCAGGAACCAGGCGCATGTTCGTTTCAGTAATCTCCTCTTCTTCCTTTTCCAGGCTTCGGACGAGGAGATGCAGACCATAAGCTCTCTGCAGGAGCAGAAGGAGGACCTGCGCAAGCGTCTCTCTTACACCACTCATAAGCTGGAGCTGTTGGAGCGGGAGTTCGACTCTACAAGGCAGTACCTGGAAACAGAGCTGCGCAGAGCTCAGGAGGAGCTCGACAAGTTTACAGACAAATTACGCCGAATACAGAGCAGTTACTCAGCACTGCAGAGGATCAACCAGGACTTAGAGGATAAAATCCACCGAAATTCCCAGCACCACGATGATGAGAAACGGGCTCTCAGTCGCGAAATCATCGTTCTTAACAATCATCTCATGGAAGCCAAGATGACCATTGAGAAGCTCAGAGAGGACAATGACTTGTACAGAAAAGACTGTAACCTTGCTGCACAGCTTTTGCAGTGCAATAAATCACATTACAGAGCCCAGTTATCCGAGTTACCTGCAGAGTTTCAGGAGCGTGTAAGCTTGCACATGGAGGGTTCTTCCCTCTGCCACTCCCCATATGCCGACACAGTGCCTGCTTCTGTCATTGCTAAGGTCCTGGAGAAACCAGAAGAGGCCTGCAGCAGTCAAGCCTCTCGCTCACCCAGCCCACAACCCCAGGAACGCCAGGGCTTCCTTGTGGGCACCAGCCTTGTGGGTAGCACTGAGCGCCTTGGCCTCCGAGCTACTTACAAGTCAGACCTGTACAGCAGTGACACAGCACTTTATTGTCCTGATGAACGGAGACGAGAGCGCAGACCCAGCATGGACCTCCATGGACAAAGAAAAGTTTACGAGCCCCAGAACTCCACGGATAGCAACCCAGAAGAGGGATCAATGTCCCTACAGCCTGGCTTCTCGCAGGACCACTTCCGAAAGTTTACAACCTCTCTGGGAGGAGGCTCCAGCTCTTACTCCAGCTTTAGTGGAGGAGGATCGGAGGACAAGGGTCAGGATCCTCAGAGTAGTGCTGCATCTTCTCCACGCCACCCTGCCCTTTATATGGACTGGAGGGATGGGGGTGAATACGAGCACAAGAGCGATTCCTCCTGGGAGCGGGAGAGTCCAAGCGCCTTCACGAAGGCACATGCTTTTCAACCGCCTGAGACCAGCCACCATCAGAATGGTAGCTCTCCCATTTACAGCAGAACAATGTCCTCTTGTTACAGTGAACCTTATGAGCCCCTGCCACCTTCCACCTCTCCAAGCATCACCTATGGTGACAGTCGCCGCGGAAGTGCTTTTGCTCCTGAGGAAGAAGAGCTGATTGGGCGGTGGAGGCAACTCAGCGTGGAGGATCTGAGTGCCCACTCATACCGCAGCCCTGGGCGGGCATCACCCTACAGTTTCTCAGAGCAGCACTTCTCTGTCCGGCCTGCAAAAATTCGCCTTGGTCCACTCTACAGTAGCTTCCAGGAGGGTACTGATGTATACCATCATGCTGGGGTACTTGACCCCTTCTCCAGCCCAAGCCCTGACTGCAGCCCAGGTTTACGACAACAGCAAAGCCAACCACACCTGTACCGCTCCAAGGAGGATAGCCAAGAGTCTGAGCATAGCCTCTACAGCCCCAAGGACGGTGGGGTGGCAGCTGGGGGCCAAGCAACTGAATATGTTGATGTAAGTCCAAACAGCTCAAATGAGTCACTGGACCATGGATCTCTGGAAATGGGTGCTGAACTGCAGCATTATCAACCCGAGAGGCACAGCGTGTCCCCTCAGGGAACCACCCCACCGCCTCCTCCACAACAACCGTACCAAAAATTTGGCACACTAGGGCTGTCACGTAAGGACAGTCTCACCAAGGCACAGCTCTATGGTACTCTACTAAACTAAGTGTGGGGTTTCTTGGTTACTCTTTTTTGCAGCTCTATGGTACTAAGAGCAGGGTTTCCTGGTTACTTTCTTTTGTTGGTAGGTTTTGAATGTTAAGCTACAGTTTGAGCCAAACACTTGATGGGATTTTCTGCTGAATCTTTTCATTCCATCAGCTCTCTtatcttttttttccctctcggTTTCTGTATCTGTTAGTGTTTTCTAAACATCAAACATGAATTGCTCATGTTTGTACAGTTGATATGAAGCTCGGCACTATTTGTATAGCCTATTTTGAAAGTTTATTAATGGTTCTGTGTGGTTTGTGAGAAAGTATTTCAAGTGCATTAGGTGGTTACGGACTTTTGGAAACAAGTCTtcgaagagagagaaagagattaattttgttttaccAAAAGCCTTCGGCTCGAAAGGGTTTGTGAATGGACAGCACATGCTATGTAAAAAGAATTGCAAATTTTGACAAGAAATctgatcttttattatttaatttatgaataGCTGTATTTATTGTTAAGTATGCTATAtctattgtttaataaatgtaacaCTATGGGAAGATTGAACAATCTATataattgtaaattatttatattgcTATAAATAAGGCAATCAGCACAATTATACAAGCTGCAAACGATTAAAGATGCCTCAAATGATTAGTCATGACAAGGATTTGAGATTTCATGACAATCCATTGATGGATCCTTCCAGAGGTTTGTGAGCAAGACCTTGCGCAAATATTTGAGAATAAAGTCTGCATGGATTCATATTAACCTAAGTCAGCCCTTCAAGATCAAGTCTCAGCCAAAGCGATACTTCTAATCTATTTCTATTCCACATAGGTTTGATACAGCTCAAATCTATTGCACCATCAAACGAGTACAATATCTTGGAAGCACTGGGCATTTTATTAAAGTCCTGATGTGTTTTGTTGGGCGATGGAATTTCTGAGGTGATTGTTCTTTTCAGTGTTTTCTCTATTTTGTTCCTCAGTGCTGTAAGCCCCCCCGCCCCCTCCCTCAGGCCCTCTCTACCTCACGATTCAATCCCTCTCTTCTTTCTTAATCAGCTGGGATCCTGTGTCAGTTGACACAATGATGCATGACTCTGTTTCTTGTTTTGCTTTCTATATCTAATAAAGCACAATAGTTGCACCA
>TCONS_00034201
GCTTCGGACGAGGAGATGCAGACCATAAGCATTCCagcttttggaaaaaaaaacttaatcggGAGGTAACGTCCACTTCAAATCAAGTCTGAAACTGCATGTTCCTATCACGTGATCGCATCTGGATATCCCTAATGTGGAACTATATTAAATGCAGTATGTAGTGTGAAATCTACTagatgttttgaatttaataatgCTCCAAAAATAAATCTGTCATTTTAATTGATTATA

Function

symbol description
si:dkey-174m14.3 Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to be active in synapse. Orthologous to human BEGAIN (brain enriched guanylate kinase associated).

GO:

id name namespace
GO:0098962 regulation of postsynaptic neurotransmitter receptor activity biological_process
GO:0045202 synapse cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8158 Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to be active in synapse. Orthologous to human BEGAIN (brain enriched guanylate kinase associated).

Ensembl:

ensembl_id ENSDARG00000043673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034200 False 3051 mRNA 0.47 6 9355912 9421263
TCONS_00034201 True 234 processed_transcript 0.35 2 9355970 9358130

Neighbor

gene id symbol gene type direction distance location
XLOC_017153 nt5c1bb coding upstream 54704 9277299 ~ 9301208 (+)
XLOC_017154 BX942842.1 coding upstream 56363 9299434 ~ 9299549 (+)
XLOC_017152 kcnk5b coding upstream 116875 9223514 ~ 9239037 (+)
XLOC_017151 fosl2l coding upstream 139140 9211237 ~ 9216772 (+)
XLOC_017150 bpnt1 coding upstream 207589 9128256 ~ 9148323 (+)
XLOC_017156 rad51b coding downstream 53578 9474841 ~ 9568005 (+)
XLOC_017157 ptger2b coding downstream 262731 9683994 ~ 9694666 (+)
XLOC_017158 BX284679.1 coding downstream 298858 9720121 ~ 9722138 (+)
XLOC_017159 psmc6 coding downstream 342101 9763364 ~ 9776334 (+)
XLOC_017160 ddhd1b coding downstream 360669 9781932 ~ 9823810 (+)
XLOC_017148 NA non-coding upstream 348576 8998775 ~ 9007336 (+)
XLOC_017147 NA non-coding upstream 358449 8996867 ~ 8997463 (+)
XLOC_017146 CR853291.1 non-coding upstream 359931 8993860 ~ 8995981 (+)
XLOC_017145 CR388209.3 non-coding upstream 421389 8934408 ~ 8934523 (+)
XLOC_017162 NA non-coding downstream 530301 9951564 ~ 9953982 (+)
XLOC_017163 NA non-coding downstream 646672 10067935 ~ 10068758 (+)
XLOC_017165 NA non-coding downstream 800152 10221415 ~ 10225073 (+)
XLOC_017166 NA non-coding downstream 1068195 10489458 ~ 10490064 (+)

Expression


Co-expression Network