XLOC_017159 (psmc6)


Basic Information

Item Value
gene id XLOC_017159
gene name psmc6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9763364 ~ 9776334 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034206
ATCACGAAGAAGCGCGAGAGCGAAGCGGCAGTGAACATGGCGGAAAACAGGGAGAAAGGTTTACAAGACTACAGAAAGAAATTACTGGAGCATAAAGAGATTGACGGGCGCCTCAAAGAGTTGAGAGAGCAGCTGAAGGAGCTCACTAAACAATATGAGAAGTCTGAGAATGACCTGAAGGCTTTACAGAGTGTGGGGCAGATTGTCGGTGAAGTGCTGAAACAGCTGACTGAGGAGAAATTTATTGTTAAAGCAACTAATGGACCACGATATGTGGTTGGATGTCGCAGACAGctGGATAAATCCAAGCTGAAGCCTGGCACTAGAGTGGCTCTGGACATGACAACTCTCACTATCATGAGGTATTTGCCTCGTGAGGTGGATCCTCTAGTGTACAACATGTCCCATGAAGACCCTGGTAGCGTTTCATACTCTGAGATTGGTGGACTGTCTGAGCAGATTCGTGAGCTGAGAGAGGTGATTGAGCTTCCTCTGACCAATCCTGAGCTGTTCCAGAGGGTGGGCATTATTCCTCCCAAAGGCTGCCTGCTCTACGGACCTCCAGgCACTGGAAAGACTCTTCTTGCCAGAGCTGTGGCCAGTCAGTTGGACTGCAATTTCCTTAAGGTTGTGTCCAGCTCCATTGTTGACAAGTACATTGGTGAGAGTGCCAGACTCATCAGAGAGATGTTCAACTACGCCAGAGACCATCAGCCCTGCATCATCTTCATGGACGAGATCGATGCTATTGGTGGACGTCGGTTTTCTGAAGGAACCTCAGCTGATAGAGAGATCCAGAGGACACTGATGGAGCTGCTGAATCAGATGGATGGATTCGACACTCTTCATAGAGTCAAGATGATCATGGCCACCAACCGGCCAGACACTTTAGATCCTGCCCTGCTGCGTCCTGGACGTCTGGACCGAAAAATTCACATCGAGTTGCCCAATGAACAGGCTCGACTGGACATCCTGAAGATCCATTCTGGTCCAATAACCAAGCATGGAGATATAGattatGAAGCCATTGTCAAGCTTTCAGATGGCTTTAATGGAGCAGATTTGAGGAATGTGTGCACTGAAGCTGGTATGTTTGCCATCCGTGCGGACCATGAATATGTGACCCAGGAGGATTTCATGAAAGCTGTGAGGAAGGTGGCTGACTCGAAGAAGCTGGAGTCCAAACTCGACTACAAGCCTGTATAAAACCATACACACAATTATTTTGTGCAGAGTATAAATGTGAGGGGTTTCTGGTCAGTAATCTATATACTGTCCATGGACATAAAACTTTTTTCTAAAGTTACTGCAATGTTTTTTTTGAGAACATTTTGAAAGCATTCTGATGTTCAGTTTCCATCACTACCATCAAGCGACTTCAGTTATTCAGTTAAAGCATTGTTTAGCCCCCCCAGTTTGATACAAAGCTTTACCTGTTGGCCAAGTATGTGGATCTGTAAAATCATTCGGCTCTTTAGCATTCTGTGTGATCAGTTGTATAAACTGTGTTTGCCTGGCCTGCTTCTTTccacatcatttaagaaataaataataaaacaaa
>TCONS_00034207
ACGAAGAAGCGCGAGAGCGAAGCGGCAGTGAACATGGCGGAAAACAGGGAGAAAGGTTTACAAGACTACAGAAAGAAATTACTGGAGCATAAAGAGATTGACGGGCGCCTCAAAGAGTTGAGAGAGCAGCTGAAGGAGCTCACTAAACAATATGAGAAGTCTGAGAATGACCTGAAGGCTTTACAGAGTGTGGGGCAGATTGTCGGTGAAGTGCTGAAACAGCTGACTGAGGAGAAATTTATTGTTAAAGCAACTAATGGACCACGATATGTGGTTGGATGTCGCAGACAGctGGATAAATCCAAGCTGAAGCCTGGCACTAGAGTGGCTCTGGACATGACAACTCTCACTATCATGAGGTATTTGCCTCGTGAGGTGGATCCTCTAGTGTACAACATGTCCCATGAAGACCCTGGTAGCGTTTCATACTCTGAGATTGGTGGACTGTCTGAGCAGATTCGTGAGCTGAGAGAGGGTGGGCATTATTCCTCCCAAAGGCTGCCTGCTCTACGGACCTCCAGgCACTGGAAAGACTCTTCTTGCCAGAGCTGTGGCCAGTCAGTTGGACTGCAATTTCCTTAAGGTTGTGTCCAGCTCCATTGTTGACAAGTACATTGGTGAGAGTGCCAGACTCATCAGAGAGATGTTCAACTACGCCAGAGACCATCAGCCCTGCATCATCTTCATGGACGAGATCGATGCTATTGGTGGACGTCGGTTTTCTGAAGGAACCTCAGCTGATAGAGAGATCCAGAGGACACTGATGGAGCTGCTGAATCAGATGGATGGATTCGACACTCTTCATAGAGTCAAGATGATCATGGCCACCAACCG

Function

symbol description
psmc6 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0030163 protein catabolic process biological_process
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly biological_process
GO:0006508 proteolysis biological_process
GO:0031597 cytosolic proteasome complex cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-304 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

Ensembl:

ensembl_id ENSDARG00000037038

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034206 False 1561 mRNA 0.46 14 9763364 9776334
TCONS_00034207 True 834 nonsense_mediated_decay 0.49 11 9763367 9768749

Neighbor

gene id symbol gene type direction distance location
XLOC_017158 BX284679.1 coding upstream 41226 9720121 ~ 9722138 (+)
XLOC_017157 ptger2b coding upstream 68698 9683994 ~ 9694666 (+)
XLOC_017156 rad51b coding upstream 195359 9474841 ~ 9568005 (+)
XLOC_017155 si:dkey-174m14.3 coding upstream 342101 9355912 ~ 9421263 (+)
XLOC_017153 nt5c1bb coding upstream 462156 9277299 ~ 9301208 (+)
XLOC_017160 ddhd1b coding downstream 5598 9781932 ~ 9823810 (+)
XLOC_017161 stxbp6l coding downstream 52435 9828769 ~ 9848953 (+)
XLOC_017162 NA coding downstream 175230 9951564 ~ 9953982 (+)
XLOC_017163 NA coding downstream 291601 10067935 ~ 10068758 (+)
XLOC_017164 kcnk10a coding downstream 389963 10166297 ~ 10220280 (+)
XLOC_017154 BX942842.1 non-coding upstream 463815 9299434 ~ 9299549 (+)
XLOC_017148 NA non-coding upstream 756028 8998775 ~ 9007336 (+)
XLOC_017147 NA non-coding upstream 765901 8996867 ~ 8997463 (+)
XLOC_017146 CR853291.1 non-coding upstream 767383 8993860 ~ 8995981 (+)
XLOC_017165 NA non-coding downstream 445081 10221415 ~ 10225073 (+)
XLOC_017166 NA non-coding downstream 713124 10489458 ~ 10490064 (+)
XLOC_017171 NA non-coding downstream 1293282 11069616 ~ 11071165 (+)

Expression


Co-expression Network