XLOC_017160 (ddhd1b)



Basic Information


Item Value
gene id XLOC_017160
gene name ddhd1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9781932 ~ 9823810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00034208
TGTTGAGATTCGAGTATGGTTTAGTATGGTATCGAGTTCGGACAGATTCATTTCAGGACAACTCGTTCAAACTATTTTTTGGACCCGTTAAAAAAGACTCGACTCAACATAAAGATTCATTTTTGAATTGGACGTCGCTTTAGAGCAGAGGGGCTCCACGGGGAGAAATACAGTCGGCATATAAATGAAAAGTGAACAGGTTGGCGTGTCTGCTCTATAACTTGAGGACTGCCCGAGTGATATCTGCTAGTAATTCATGGAGTCCAAGTCCAGCGTGTGTGATTGACGCCTCCGGACAGATGCTGGCCGCTTTAGTGGCGCCGGGGGAAGGAGAGGTTTTGACACCGTTagatttgttgttattataatcaGCTGACCGGTGCTGAAACCGCTCTGTTTGCTGTTTTCTAGAAAGCGGCGACAGTAATGAGCGCTTGTCAGGACAAATCGTCTTTGAGTTGCTCGGAAAGCAGAGAAAATGTCAGCGGTAGTGAATGGGGAAGGATGGATGATGGTTGCGCGTCCTGCTTTAACGACCCCACGGGCGACGCGATTCACGGCGGGATGGACGCGGTGCAGCCGGGCATAACATTGGACGGACATCTGCCGCTTCCCCCAGGCCAGCTGATGCTAGGCCTGGTGGAGGAGGGTTTCGCTGGCTATCATAGCCATCTCGGCTCTGATCCGGACACTGATTATCTCGACATCCCCGGCGACCCGAATTACAGCGAAAGTGACGGGAACGTCGCCACGAAAAAGCGCAACCGCTCCAACAGCTCGCGCCACCGCGGGGAAGTTGTCACGGAACTCGGACCCGAGGAGGTGCGCTGGTTTTACAAGGAGGACAAGAGGACCTGGAAACCGTTCGTTGGCCACGATTCCTTAAAAATCGAGCTGGCGTATCGTAAATACTGCGAACTTAATCCGGAAGAGGTCAAACGGAGGGATGCGACGGAAGAAGCGGAGGATTTATTCGAGTCTTCTTCAGGATGCGAGGAACCGGCGGTTCGGAGGCAGTCGGCGGCGGTGGCAGCTCAGCCGGTACCCGACAGCGCGGATGCGGGATGCTCAGCGGACGATTCGGTGTTCAGGTCAGACAGCGTCAACGTGGAcgcagtgtgtgtgcgtggaGGACTCTATGAGGTGGACATCAAAGGAAAGAGCTGCTATCCTGTGTACTGGAACCAACAGGACCACATCCCAGTCATGAGAGGCCAGTGGTTCACAGACGGCACCTGGTTGCCCTTGGAGGAGGAGGACAGTGACCTTATTGAACTGGAGCACTTAGCCTGTTTCCGGGGCCAGCAGATGAAGGACACCTTTGACACGGAAGCAGTGGCCACCACAGTGGACAGCAAAGACGCCATTCACAGTCTGAAACTGAGCCGGAGCCACGTGGACTGGCACAGTGTGGATGAAGTGTACCTTTACAGCGACGCCACCACCTCTAAGATTGCACGGACGGTCACTCAGAAGCTGGGATTCTCAAAAGCCTCCAGCAGTGGGACGCGTCTCCACCGGGGTTACGTAGAGGAGGCGGCTCTAGAGGACACGCCCCCTGAAACTACACACATAGTCTTTGTGGTACATGGAATTGGCCAAAAGATGGATCAGGGGCGTATCATTAGAAATACAAGCATGATGCGGGATGCTGCCCGTAAGATGGAGGAGAAGCACTTCTCTGACCGAATTAATGAACATGTCGAGTTCCTTCCTGTGGAATGGCGGTCTAAACTCGCCCTCGATGGAGACACTGTGGACTCCATTACTCCAGACAAAGTGCGAGGTCTGAGAGATATGCTGAACAGCAGCGCAATGGACATTATGTACTACACAAGCCCTTTGTACAGGGATGAGATCACCCGGGGTCTGACCAAAGAGTTGAACCGCCTCTACATGCTCTTTTGCGAGCGCAACCCAGAATTTGCAGAGAAAGGAAAAGTGTCCATCGTCTCGCACTCGCTCGGCTGTGTCATCACCTTCGACATCATGACAGGCTGGGATCCTGTCCGCTTTGTTCATGAAGATGTGCCAGATGTGATGGAGGCTGATGTGAGCAGACAAGAGCGTCAGTTGCTTGAAGAGCTTCGGCTCACTTACTTAAGAATAAGGGATTTGGAAGACAGGCTTCAGAATTTCCAAACCTCATCCTCAAGACCATCTCCAGCCCTAAAATTCAAGGTGGAGAACTTCTTCTGTATGGGATCTCCTCTGGCTGTGTTTTTGGCTTTGCGAGGGGTTCGTCCTGGAAGCGGCGGAACACAGGACCACATTCTGCCCACATCCATCTGCCAGCGGCTATTCAACATCTTCCATCCCACTGATCCTGTAgCATACAGGTTGGAGCCTCTCATTCTGAAGCATTATAGTAATATAACACCTGTCCAGATTCACTGGTACAACACCACCAGCCCCACACCGTATGACCAGATCCGTCCCACTCTACTGAATCCATCAAAGGAAAATGCGTCAGTGTCGGATACGGAGAGTCTGCCAAGCCCCTGCACCTCTCCACCTCAGCCTCGCAGACACTACAGCGAGTCCATCACCAACCTGGGCAAGGCCAGCATAATGGGAGCGGCTAGTATAGGCAAAGGCATTGGCGGTATCCTGTTCTCCAGGTTTTCTCGCTCCAGTGGACAGGTCGGTGGTGTGGAGGAGGAGACGTCAGACTCTGAAGGCGGGACGTGTGAGAAAGGAGACGAGAACAGGTCTGTGGATTTAGATGATAAACCAGACGAGAAGACAGAGGAGAAAATTGAGGAGAAGACGGGAGACACCAGCATGTCACAATCAGCCTCGACCATTATGGATTATTCCTCCTTGGAGCTGGAGAAGCGCATTGACTTTGAGCTGCGGGAGGGTCTGGTGGAGAGCCGCTACTGGTCAGCAGTAACGTCACACACGGCCTACTGGTGCTCGCACGACGTGGCTCTGTTTCTGCTGACGTTCTTGTACAGGCCAAACGAAGCCAATGACATGGCAGAGGACAATCTCGAATcctaacacacactcacagacaaacTCTCACCCTCAATCACCCTCCTAATTTAGTTTAGCAGACCTCATTCACTGTGCATCAGAGATCCTGtccttgtcttgttttttctTCATTCAGAAGCACATCCATCGAGGAGACTCACACTCTCCTCTACGTCCCCCAACTAGGACTGTTTGATGAAACGGTGTTAATGATCCTACTAGTAACTTCCGACCATTCACACGTTGACGTTTCCCAAAAGCAGCAAACTTTTCATATTGACCGATGTGTATGAACTTATTATGGTATGGCTCACTGAATTGGAGGAATTCAACTGAATTGCACAATCAGAGGGGTTTTTAGAGGAATGTGTCTGATGTGATTGATTTCCTTGCCAAAAAAtttatagttttaattattttgtttttatttattctatat
>TCONS_00034209
CGGAGGCAGTCGGCGGCGGTGGCAGCTCAGCCGGTACCCGACAGCGCGGATGCGGGATGCTCAGCGGACGATTCGGTGTTCAGGTCAGACAGCGTCAACGTGGAcgcagtgtgtgtgcgtggaGGACTCTATGAGGTGGACATCAAAGGAAAGAGCTGCTATCCTGTGTACTGGAACCAACAGGACCACATCCCAGTCATGAGAGGCCAGTGGTTCACAGACGGCACCTGGTTGCCCTTGGAGGAGGAGGACAGTGACCTTATTGAACTGGAGCACTTAGCCTGTTTCCGGGGCCAGCAGATGAAGGACACCTTTGACACGGAAGCAGTGGCCACCACAGTGGACAGCAAAGACGCCATTCACAGTCTGAAACTGAGCCGGAGCCACGTGGACTGGCACAGTGTGGATGAAGTGTACCTTTACAGCGACGCCACCACCTCTAAGATTGCACGGACGGTCACTCAGAAGCTGGGATTCTCAAAAGGTTTGTTAAACATTTGATTAGTAAATACTCTCACGTGTTGCTAATTAATAGAACACATCAAATCTAAAATAATGCAAATCACATATTTAATATACAAGTTCATGTTTGGATTTTACACATATAAAACTTGTTATTTCAAAAGATTACAAAAATtgaatttcttttctttaaagagcccctataatgGGTTTTTGAAattgaccttccatgtagtgtgtaacatagcgctaagtgaagtgaaatatccagctaaggcttaaa
>TCONS_00034210
GTGACGTATGAACAACACCAATCAAAGCTGTTTTTAAGAACAGGACCACATCCCAGTCATGAGAGGCCAGTGGTTCACAGACGGCACCTGGTTGCCCTTGGAGGAGGAGGACAGTGACCTTATTGAACTGGAGCACTTAGCCTGTTTCCGGGGCCAGCAGATGAAGGACACCTTTGACACGGAAGCAGTGGCCACCACAGTGGACAGCAAAGACGCCATTCACAGTCTGAAACTGAGCCGGAGCCACGTGGACTGGCACAGTGTGGATGAAGTGTACCTTTACAGCGACGCCACCACCTCTAAGATTGCACGGACGGTCACTCAGAAGCTGGGATTCTCAAAAGCCTCCAGCAGTGGGACGCGTCTCCACCGGGGTTACGTAGAGGAGGCGGCTCTAGAGGACACGCCCCCTGAAACTACACACATAGTCTTTGTGGTACATGGAATTGGCCAAAAGATGGATCAGGGGCGTATCATTAGAAATACAAGCATGATGCGGGATGCTGCCCGTAAGATGGAGGAGAAGCACTTCTCTGACCGAATTAATGAACATGTCG
>TCONS_00034211
CCTCTACATGCTCTTTTGCGAGCGCAACCCAGAATTTGCAGAGAAAGGAAAAGTGTCCATCGTCTCGCACTCGCTCGGCTGTGTCATCACCTTCGACATCATGACAGGCTGGGATCCTGTCCGCTTTGTTCATGAAGATGTGCCAGATGTGATGGAGGCTGATGTGAGCAGACAAGAGCGTCAGTTGCTTGAAGAGCTTCGGCTCACTTACTTAAGAATAAGGGATTTGGAAGACAGGCTTCAGAATTTCCAAACCTCATCCTCAAGACCATCTCCAGCCCTAAAATTCAAGGTGGAGAACTTCTTCTGTATGGGATCTCCTCTGGCTGTGTTTTTGGCTTTGCGAGGGGTTCGTCCTGGAAGCGGCGGAACACAGGACCACATTCTGCCCACATCCATCTGCCAGCGGCTATTCAACATCTTCCATCCCACTGATCCTGTAGTGAGTGTGATTAGACTGCTGTGTAAATAAAGCCTCGGATCAGATGCATCCGATTTTTTCCCCatgct

Function


symbol description
ddhd1b Predicted to enable phospholipase activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 28. Orthologous to human DDHD1 (DDHD domain containing 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-18 Predicted to enable phospholipase activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 28. Orthologous to human DDHD1 (DDHD domain containing 1).

Ensembl:

ensembl_id ENSDARG00000037042

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00034208 False 3421 mRNA 0.51 13 9781932 9823810
TCONS_00034209 False 745 lncRNA 0.47 3 9782940 9791721
TCONS_00034210 False 557 mRNA 0.53 5 9785952 9794316
TCONS_00034211 True 510 lncRNA 0.49 3 9797088 9801542

Neighbor


gene id symbol gene type direction distance location
XLOC_017159 psmc6 coding upstream 5598 9763364 ~ 9776334 (+)
XLOC_017158 BX284679.1 coding upstream 59794 9720121 ~ 9722138 (+)
XLOC_017157 ptger2b coding upstream 87266 9683994 ~ 9694666 (+)
XLOC_017156 rad51b coding upstream 213927 9474841 ~ 9568005 (+)
XLOC_017155 si:dkey-174m14.3 coding upstream 360669 9355912 ~ 9421263 (+)
XLOC_017161 stxbp6l coding downstream 4959 9828769 ~ 9848953 (+)
XLOC_017162 NA coding downstream 127754 9951564 ~ 9953982 (+)
XLOC_017163 NA coding downstream 244125 10067935 ~ 10068758 (+)
XLOC_017164 kcnk10a coding downstream 342487 10166297 ~ 10220280 (+)
XLOC_017165 NA coding downstream 397605 10221415 ~ 10225073 (+)
XLOC_017154 BX942842.1 non-coding upstream 482383 9299434 ~ 9299549 (+)
XLOC_017148 NA non-coding upstream 774596 8998775 ~ 9007336 (+)
XLOC_017147 NA non-coding upstream 784469 8996867 ~ 8997463 (+)
XLOC_017146 CR853291.1 non-coding upstream 785951 8993860 ~ 8995981 (+)
XLOC_017166 NA non-coding downstream 665648 10489458 ~ 10490064 (+)
XLOC_017171 NA non-coding downstream 1245806 11069616 ~ 11071165 (+)

Expression



Co-expression Network