XLOC_017163


Basic Information

Item Value
gene id XLOC_017163
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 10067935 ~ 10068758 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036546
aaacctgactcGGAGATGGACCAACAACCAACCTAGAAACCACCAAGAACATTCCAGCAACCACCCAGTGCACCTCGTAAACCACAAAGCAACGTACTGGTAACCATTGCCACACCACAGTGTAACAGCGAGTTTGCAGGGAAAAACGCTGTGTAGAATCATGAAAGGAATTCCTAAGAAGTGTACGAGACCTCCACGTATCCCCTCGGTTGTAATAAGGGAGAGAGCGGTAACCCCAAACTGGCTGCTCGGCTGCACAGAAAATGGTTTTCCTTGACAAATGAGGTGATGCGGACCAGGCTCAGATGGATGGGGGTTTGGGCTGGTTGTATCAGGGCTCTTGGGATGCTGGGTATTTACTCAGTCATTCATCATCCTCTGGCACATCCACTTATACAGGATCTGCACCGCACACCCATACTGATGTAATTCTCCACATGGAGAGCTGAATTACCATAGCCTGTCCTCAGTATGTGTGTATACGGATATGTTATTGTGAAGCGTGGAACAATTTTCTGCATGTGAGTCTGCACACTTTTATGTATCTGTGAAGCTCAAACTGTCACAGCTGACTGTTTTATGGGAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036546 True 586 lncRNA 0.47 2 10067935 10068758

Neighbor

gene id symbol gene type direction distance location
XLOC_017162 NA coding upstream 113953 9951564 ~ 9953982 (+)
XLOC_017161 stxbp6l coding upstream 218982 9828769 ~ 9848953 (+)
XLOC_017160 ddhd1b coding upstream 244125 9781932 ~ 9823810 (+)
XLOC_017159 psmc6 coding upstream 291601 9763364 ~ 9776334 (+)
XLOC_017158 BX284679.1 coding upstream 345797 9720121 ~ 9722138 (+)
XLOC_017164 kcnk10a coding downstream 97539 10166297 ~ 10220280 (+)
XLOC_017165 NA coding downstream 152657 10221415 ~ 10225073 (+)
XLOC_017166 NA coding downstream 420700 10489458 ~ 10490064 (+)
XLOC_017167 zgc:100997 coding downstream 429946 10498704 ~ 10520821 (+)
XLOC_017168 serpina1l coding downstream 469267 10538025 ~ 10541197 (+)
XLOC_017154 BX942842.1 non-coding upstream 768386 9299434 ~ 9299549 (+)
XLOC_017148 NA non-coding upstream 1060599 8998775 ~ 9007336 (+)
XLOC_017147 NA non-coding upstream 1070472 8996867 ~ 8997463 (+)
XLOC_017171 NA non-coding downstream 1000858 11069616 ~ 11071165 (+)
XLOC_017172 NA non-coding downstream 1574324 11643082 ~ 11644348 (+)
XLOC_017173 NA non-coding downstream 1661561 11730319 ~ 11736228 (+)

Expression


Co-expression Network