XLOC_017166


Basic Information

Item Value
gene id XLOC_017166
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 10489458 ~ 10490064 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034216
GGATTCGACTCTGAGTGAATGATTCATTCACGAAGCTCTATTTAACTGCACGATGTTGCATGGGCTGAGGAGACATGTTGTTGAAGGCTGCATAAATGTTACTTGTATGAAGTTTGAGACCGAATAGAAGCACGGACCCTGAATTGCTCgacaaaatgtgtttaaaatggcTTTGTTTACACTTATAACtaatttattgttaaataaaacaaattgtacaAAACCTTTTG
>TCONS_00036548
CTGAGTGAATGATTCATTCACGAAGCTCTATTTAACTGCACGATGTTGCATGGGCTGAGGAGACATGTTGTTGAAGGCTGCATAAATGTTACTTGTATGAAGTAAGTAGCTTAAGATAGCCTACTTTTGCACGCATATTGGCATGATTAAAGCAGTGCAGTCTCGCGGTCCGGTCTCCTGTTTGTCCAGTGACTCGAGACTCTGCGAAGCTGCACAGATCAGACTGAAGGATCCAAAGGCGTTACTTCTCCAGACTGAAGTTTTACGTGCGATATTCTTTCGACAGATCTTAACCTGTTTCCACGGCGGTAATGGTTGTGTTGTACCGTTACCAATCTAAAAACAGGCAGAGTAAAACAGCGGCAGTCAGATATTGTCTGGCAGGAGGAGCGCGCCTTTCAGACACTTCGAATTGCCACAGTTGTAGCATTGTGTTGCGGAGGAACCATTGATTAATTCATATTAACTTCTTTTATAGGTTTGAGACCGAATAGAAGCACGGACCCTGAATTGCTCgacaaaatgtgtttaaaatggcTTTGTTTACACTTATAACtaatttattgttaaataaaacaaattgtacaAAACCTTTTG
>TCONS_00034217
AGTGCAGTCTCGCGGTCCGGTCTCCTGTTTGTCCAGTGACTCGAGACTCTGCGAAGCTGCACAGATCAGACTGAAGGATCCAAAGGCGTTACTTCTCCAGACTGAAGTTTTACGTGCGATATTCTTTCGACAGATCTTAACCTGTTTCCACGGCGGTAATGGTTGTGTTGTACCGTTACCAATCTAAAAACAGGCAGAGTAAAACAGCGGCAGTCAGATATTGTCTGGCAGGAGGAGCGCGCCTTTCAGACACTTCGAATTGCCACAGTT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000083738

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034216 False 230 lncRNA 0.36 2 10489458 10490064
TCONS_00036548 False 597 lncRNA 0.42 1 10489468 10490064
TCONS_00034217 True 270 scaRNA 0.49 1 10489621 10489890

Neighbor

gene id symbol gene type direction distance location
XLOC_017165 NA coding upstream 264385 10221415 ~ 10225073 (+)
XLOC_017164 kcnk10a coding upstream 269178 10166297 ~ 10220280 (+)
XLOC_017163 NA coding upstream 420700 10067935 ~ 10068758 (+)
XLOC_017162 NA coding upstream 535476 9951564 ~ 9953982 (+)
XLOC_017161 stxbp6l coding upstream 640505 9828769 ~ 9848953 (+)
XLOC_017167 zgc:100997 coding downstream 8640 10498704 ~ 10520821 (+)
XLOC_017168 serpina1l coding downstream 47961 10538025 ~ 10541197 (+)
XLOC_017169 serpina1 coding downstream 54036 10544100 ~ 10547411 (+)
XLOC_017170 si:ch211-155i14.1 coding downstream 233228 10723292 ~ 10730176 (+)
XLOC_017171 NA coding downstream 579552 11069616 ~ 11071165 (+)
XLOC_017158 BX284679.1 non-coding upstream 767320 9720121 ~ 9722138 (+)
XLOC_017154 BX942842.1 non-coding upstream 1189909 9299434 ~ 9299549 (+)
XLOC_017172 NA non-coding downstream 1153018 11643082 ~ 11644348 (+)
XLOC_017173 NA non-coding downstream 1240255 11730319 ~ 11736228 (+)
XLOC_017175 NA non-coding downstream 1421488 11911552 ~ 11916287 (+)
XLOC_017176 NA non-coding downstream 1490714 11980778 ~ 11985215 (+)

Expression


Co-expression Network