XLOC_017171


Basic Information

Item Value
gene id XLOC_017171
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 11069616 ~ 11071165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036549
GTGGCGGTAAATTGAGTCACAACTGGAGCCGCTCCATGTCTCTCAGGGTGAGTCTGATGTGTTCGGCAGGCTCCAGTGCTGTCAGATGCTTGTATCAGAGCTCTGGTGAACGCAGCATATGCTTGATAGGCCGTTTGGGCCTCTGCTCTGTAGTTCACATTCCAAGTTATTAACATGTCCTGTGGGCTGGTGTTTTGGAAAGTATTAATGCATTTATCCTGACTTAATTCACCAGAGTGCAGAGGCAAGTTTTGTTTACTGCAACAAAACTATAACatttgctcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattcacttatttacttACATATTAGTGCTaggcaaagattaatcatgattaaaaataaaataaatgtttgttttaacctaatgcatttgtgtgttttatttattagttatttattggATTTAAAATCATACACTCAAACACAAACTACACCaaacaacatttacatttatatttaaaattactttacaatattcattaattttcttttcagcctagtccctttattaatctgaggttgcacagcggaatgaaccgccaacttatccagcatatgttttacgcagtggatgcccttccagctgcaacccatcactgagaaacatccacgcacactcattcacacctaTACACTAAGGACAGTTTAGCCTACAAAAATTCAGCTATaccaatgtctttg

Function

GO:

id name namespace
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036549 True 741 lncRNA 0.37 2 11069616 11071165

Neighbor

gene id symbol gene type direction distance location
XLOC_017170 si:ch211-155i14.1 coding upstream 339440 10723292 ~ 10730176 (+)
XLOC_017169 serpina1 coding upstream 522205 10544100 ~ 10547411 (+)
XLOC_017168 serpina1l coding upstream 528419 10538025 ~ 10541197 (+)
XLOC_017167 zgc:100997 coding upstream 548795 10498704 ~ 10520821 (+)
XLOC_017166 NA coding upstream 579552 10489458 ~ 10490064 (+)
XLOC_017172 NA coding downstream 571917 11643082 ~ 11644348 (+)
XLOC_017173 NA coding downstream 659154 11730319 ~ 11736228 (+)
XLOC_017174 si:ch211-155o21.4 coding downstream 728898 11800063 ~ 11803995 (+)
XLOC_017175 NA coding downstream 840387 11911552 ~ 11916287 (+)
XLOC_017176 NA coding downstream 909613 11980778 ~ 11985215 (+)
XLOC_017165 NA non-coding upstream 844543 10221415 ~ 10225073 (+)
XLOC_017163 NA non-coding upstream 1000858 10067935 ~ 10068758 (+)
XLOC_017162 NA non-coding upstream 1115634 9951564 ~ 9953982 (+)
XLOC_017158 BX284679.1 non-coding upstream 1347478 9720121 ~ 9722138 (+)
XLOC_017177 BX322618.1 non-coding downstream 1132597 12203762 ~ 12208117 (+)

Expression


Co-expression Network