XLOC_017198


Basic Information

Item Value
gene id XLOC_017198
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14487757 ~ 14623918 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036559
CTCCGCCTCAAACTGTTATGCACCTTGGGTTTCTTGTCCTCTCCGCCATTAGTCCGTAACTTTCAACGATCACTGCCGATGCTTTCGAAGGGAAGATTCACTTCTACTGGATGTAAAGATGCAAACCAACAACATAGTCAGAGTGAAGTTTAGAGAATGGAAGATCACATCACTCATTATTGGAAAGTGGATGCAAACCAACAACACTGTCAGAGTTTCGAGATCAGTTCAGAAAACGGAACATCACATTTCACTCATTTTTGGAAAGTAGTAAGATACAACGCACTTTCACattgtttacattaaaatgttaaataataaatatgcttTATATCAATTAgaatcaaaaatataaattaataaatatgctaTATGCTTCAGTGCCAAAACACGAACTGGTTTGTTAAAGTGATtagtctaaataaaattaaagtgaaatatttacaaaaattgtttaaaacaccttGAATTATACAGCGTTTCCATGCGAGGAGGCTGCACAGCTGGAT
>TCONS_00036560
CTCCGCCTCAAACTGTTATGCACCTTGGGTTTCTTGTCCTCTCCGCCATTAGTCCGTAACTTTCAACGATCACTGCCGATGCTTTCGAAGGGAAGATTCACTTCTACTGGATGTAAAGATGCAAACCAACAACATAGTCAGAGTGAAGTTTAGAGAATGGAAGATCACATCACTCATTATTGGAAAGTGGATGCAAACCAACAACACTGTCAGAGTTTCGAGATCAGTTCAGAAAACGGAACATCACATTTCACTCATTTTTGGAAAGTAGAATTATGTGCAGAGTGATCAATGGCAATGATTGAATGTAGTTCGAAAAACTTCCACAACAGGGAAGGAGAAAGAATTGCATGAAAAGTCATTGATGACTGAGATCGAATGGAGTGCGAAAACCACATCAGGGAAAGTGACAGAATTATGTGAAGAGTCATCAATGGCAATGATCAAATGGAGTGCAGAAACTTCCACATCAGGGAAAGAGCCAGAAAGTGAATTTAATTTCCTTCTTGATATGAGCAGAGTTTCTATCCAAAACTGCAAAtataacttatt
>TCONS_00036561
attgctttgcatcttattaacacaatcaagccttaaaattacGTTCTTGACTACCCCTTTAAACATACACCTTATTTTAGGTATTTTACAAATATGCcattctaaaaaaaacaaaaaaaaaaacatttactttagAATGTTGGAAGCAGAAGTGCTAAAACACAAACTTGCTTCTGGGTTTTTGTCTACAGTGACATCATAATTTCACCAGTGTATAGGGGTTGGTTTGGTTATGTATTGGCTTTTTAGGCTCATTTTATATCTGCATTCACTGCCTTTCAGACCCAATCTTGTGCCTTTCCTTTTCATGTTTACAGGAATTATGTGCAGAGTGATCAATGGCAATGATTGAATGTAGTTCGAAAAACTTCCACAACAGGGAAGGAGAAAGAATTGCATGAAAAGTCATTGATGACTGAGATCGAATGGAGTGCGAAAACCACATCAGGGAAAGTGACAGAATTATGTGAAGAGTCATCAATGGCAATGATCAAATGGAGTGCAGAAACTTCCACATCAGGGAAAGAGCCAGAAAGTGAATTTAATTTCCTTCTTGATATGAGCAGAGTTTCTATCCAAAACTGCAAAtataacttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036559 False 509 lncRNA 0.35 3 14487757 14506516
TCONS_00036560 False 552 lncRNA 0.40 6 14487757 14623918
TCONS_00036561 True 599 lncRNA 0.35 3 14611048 14623918

Neighbor

gene id symbol gene type direction distance location
XLOC_017197 si:dkey-69c1.1 coding upstream 12852 14465973 ~ 14474905 (+)
XLOC_017196 NA coding upstream 340273 14144076 ~ 14147484 (+)
XLOC_017195 kcns3b coding upstream 369461 14114258 ~ 14118296 (+)
XLOC_017194 NA coding upstream 446539 14014812 ~ 14041218 (+)
XLOC_017193 rd3 coding upstream 489922 13969414 ~ 13997835 (+)
XLOC_017199 BX901920.1 coding downstream 33223 14657141 ~ 14661432 (+)
XLOC_017200 tmed5 coding downstream 165230 14789148 ~ 14806671 (+)
XLOC_017201 pigc coding downstream 186968 14810886 ~ 14815492 (+)
XLOC_017202 mir199-3a coding downstream 251542 14875460 ~ 14875546 (+)
XLOC_017203 mir214a coding downstream 253721 14877639 ~ 14877738 (+)
XLOC_017189 NA non-coding upstream 822706 13640945 ~ 13665051 (+)
XLOC_017184 BX547930.2 non-coding upstream 1484574 13001068 ~ 13003183 (+)
XLOC_017183 BX547930.3 non-coding upstream 1513036 12968914 ~ 12974721 (+)
XLOC_017206 FP074855.1 non-coding downstream 375038 14998956 ~ 14999072 (+)
XLOC_017208 NA non-coding downstream 432078 15055996 ~ 15058705 (+)

Expression


Co-expression Network