XLOC_017199 (BX901920.1)


Basic Information

Item Value
gene id XLOC_017199
gene name BX901920.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14657141 ~ 14661432 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034261
ggcttgcagaataaaccattctaactacagtttggtctcttctcatgtctccgggtcgacctgatgaactttgctgaatctggtgcctaatataggggaaatcttacagatctgggggctcgtccgggatacatCTGATCAGACTCTCTTTGTTTTACAGATTTTGGGGGCCCCCTCAGCACAACTGACACCTCTGCAACCGCGCAACCGTTTCTGGATATCCTAGAGCAGGGGTCAGCATGACTTCCTTTTTGCTGCGGACAATTGGACTGTTTCTCTTTCTTGTTGCTCAAGCTAATGCAGCCAGGCTGAAACGCTGGACACATGATCATGAATTTGGATGGGCAGAGGATGGGGCTGACAATCCAATTGAAATAATATGTGGTATCAATATGTAAATGAGTTTTAGCTAGGTCATATAATGTATCTGGTTGTTATGTATGTTCTGTTATGCCTCATTCAGCCAAGCAAACCCCTCTTTATGCCAAACCCATGAATAAGACCTCTGCTAAATGTTTTGCCAGTTTTGCAGGATCAGGGTACCAGGACCCATATATATAATTGTCGATGACTACGATCCATACCGGATTGGCATTAGAAATGGTACATGTGATGCTCTATTTTGGGTAAAATTTGGCCATGCTAAACCCTCACCTATTAGCCACAAGGTTTTTATTAACCACTCTATTACACACCCTGTGTGTTATAACCAGACCATGGGCTCTCATTTCATGGGAAGCACTGTTAACTGTCAACAAATTGCCTCCTCGGGAGAGGGGGCCCCAGTCGACATCTCAGGACCCTCAAATGGCACTTATGTGGTCCAGGGTGGGTGGTGGTTGTGTGGGAAAAACGCCTACATGTCCCTACCGGCCAACTGGACGGGGCAGTGTGCCCCTGTGCATGTGACTGATCACACTTTTATTGTGACAGCCCAGGTCCTGTCAGCGCAGCGAAGAGTTAAACGCAGTGTCCCTGAAATGAAGCCCCATGACTCTGTATGGGGTACTCACGTGCCCGAGGATTTCAAATTATGGACCACTGGTAGTAAAATGGTATTGGCTCTATTTCCGCAAATAGGTGTGGGAAAAGCTCTACTAAGAATCGAGACCCTGGACTATCGCATGGGCCTATTTCTGAATGcctcaaaaataattaatgaggcCCAGAATAAGGAGCTGGGTAATCTACGTACCATGGTTTTGCAAAATAGAGTGGCTCTAGATCTCTTAACAGCATCCCAGGGGGAGGTATGTAAATGAGTACTGCTATGTCTACTCTCCAAGGGTTAAAAATTGCTATGACTTCTGATTATGTCCCAGACACCACATGGGGTTGGATGATGGGTCTGTTCGGCTGGGTGACTCCTTTCCTTACTATGATAATTcctgtatgtattattttccttCTTGTTTGTTGTTGTGGTCCTTTTCTCTTGCAATGTTTAATGAATCGAATCTATGCCACAATGGACAGTATGATGGGTCAACGATATGATAAGATTCCTCTGTGTTAGGCCTTTGGCCTAAAAGAGGGGACTGAGAGAACATATTGTCCTCTTTTTAGTGTGCTTGCAGCTACGTGCAGAAGTGTCtgtggttttttgtgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGATGGAAAGCCCcgctatatatacatttcttctTTATTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCTCATCCTTATCATCAggcttgcagaataaaccattctaactaca

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0098794 postsynapse cellular_component
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034261 True 1845 lncRNA 0.45 2 14657141 14661432

Neighbor

gene id symbol gene type direction distance location
XLOC_017198 NA coding upstream 33223 14487757 ~ 14623918 (+)
XLOC_017197 si:dkey-69c1.1 coding upstream 182236 14465973 ~ 14474905 (+)
XLOC_017196 NA coding upstream 509657 14144076 ~ 14147484 (+)
XLOC_017195 kcns3b coding upstream 538845 14114258 ~ 14118296 (+)
XLOC_017194 NA coding upstream 615923 14014812 ~ 14041218 (+)
XLOC_017200 tmed5 coding downstream 127716 14789148 ~ 14806671 (+)
XLOC_017201 pigc coding downstream 149454 14810886 ~ 14815492 (+)
XLOC_017202 mir199-3a coding downstream 214028 14875460 ~ 14875546 (+)
XLOC_017203 mir214a coding downstream 216207 14877639 ~ 14877738 (+)
XLOC_017204 itpa coding downstream 279832 14941264 ~ 14949443 (+)
XLOC_017189 NA non-coding upstream 992090 13640945 ~ 13665051 (+)
XLOC_017184 BX547930.2 non-coding upstream 1653958 13001068 ~ 13003183 (+)
XLOC_017206 FP074855.1 non-coding downstream 337524 14998956 ~ 14999072 (+)
XLOC_017208 NA non-coding downstream 394564 15055996 ~ 15058705 (+)
XLOC_017209 NA non-coding downstream 450304 15111736 ~ 15114901 (+)

Expression


Co-expression Network