XLOC_017218


Basic Information

Item Value
gene id XLOC_017218
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 15931394 ~ 15938307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036565
attccaagAGGTCATAGTGCCGTCCCGGGTCAATCAGAGCCAGAGGACGTAAGTGGGTGGAGCAGGGGACACAGGATGGCACAGAGtgacacacacaccaacacacactcattcactcattcattcctgCAACAGTTCAATAAATCAGCATCAGTCCTCAGTAACACATCACCACATAAAAACAAGTGATGCGGTGAAGTTCAAACAGCCAACAAAATCAGCAGAGGTCAATatcacacgtgtgtgtgtgtgtttgtgtgtgtgataaaaTACTTATTGTCCATATAAAGACAGCAAAACCCAAGAGTACAAAATATATGTTGGAGAACCTAGAAGGTTGAACAAAACACATTGACCTTAACAACAAGTATAGCAGTTAGAGAGGAACAAATACATGAGAATGAATGTCAAGGACttaaaaataattgttcaaaCAAAGGAGAGAAAGAGATGTAGTGTGAAGTAGAGTGTGGAACAAatacaatccagaaaaaaaatgcatcaattaACAGCTTAGTCACGTTTCCCGCTCTTTTTCTGTCTCCATTTATCAATCGTACTCTTGCATTATTTCATAATGTCAACCCAACATCATCGCAATTAAGTTTGGTCCAAATTCACGCTGGAAATGGTCGGAAACTTCTCTGGATGCATAATTCACATGGGTGAAGTGTCTGGCGTGAGCACAAGGGCACTCTTCCACtacattaaatatgaaaaaactcCCATTTCAACACCTCTCTCTCCATTAATTCCTGCTGCCAAGTTCATATGGTTCATCACGACCACCTAAGATcttctaaaacaaaacaaacaaaaataaaaaaacgcctCGCGGGACTTCACAGTTCAAGCCAAAATAACATTCCTCCAGTTATGTAAACACTTTATTGacagcttcttctttttttgagCGTCTGGATCTGCCGATTGACTCCTTTACTTGTCTCTTGTACATGGCAACATCGCTTGTTCACAACCCAAAGTGCTAATACCTGATATTAAAGGCTCAGAATAATACAAACGCATGTAAACAAAATCTATCCCAGATCAGCTGATCTACCGCAACACTTGTTTAAGAACATTAGACTCCCTTCCTGAAATTTAGCATCCAATCATCACCACTCTAATCCTAGTTGCCAACTTCTCCATTACCATTTGTCCCTGTCAATTTGGTTTATTATAGTTGGTCGAACAAACAGCACTACAGACACTCAAAATCCAATCCAAGCTGGATTCATGTCTTTTAATTGGCTACGATCAATGTAAATTGCTGGATGATGACTGGAAACTCTAGAACGGAGACTGGAGACGTAAACTGGTCCGTGAAACACAGAAACAGGATTTAGCCACTGTGAAAATGATGGACCCATTTAATCGAGCGTCCTAAGACATCCTAGTCTGAAGAAATAAGGAATCCTGTGTATTTTTTGAAGGCTATAAGGAACGATAGTAAAATTTCcacatcatttactcacaatttGAACAcgaaataagatattctgaagaccATTGGGAAAAaaaagccattgacatccatagtaggagcaaacaatactatggaagtcaatgactgtTTCCCCCcccaacattctacaaaatatcttcttttgtgctcaacagaagaaagaaactcaaagatttgtTACAAGTGGAGTAAATTATGactttttgggtcaactatcactttaaaggcatagttcactaaaaattgaatttgctgttaatttactcaccatctCACGAAGATGTAGGCAATTCTgtttaggtttttatttatttattattttctgtttgttttttagctGAAATCATGGTCATTGGTAATATATAGtcatataatgaaagtcaatggctactttTGGAACTTTGAgagtgtaaaaaatatatacaggccGTGAAAATAAATACAgctcctgatgatacattgaggACTTAAGAAGCAAAACAGTCAGTCTGTGCTAGAAACTGAACTTGTTCAGTTTTTTTcaacattattaatttaattcataccCAGAGCTTCCTGTCATATAATGACGTATGAAATTATGTAaacttaaacaaaataaactgtTCTTACTTTGATATTTTGGATtaaaaatgtgacaaaaaaaatctaaaataaaaagcattttcttaaaaaaatgctttgttttcagaaaaaaagtgagtcaaaattaagtaagATTTaccttaaaactaacaaaaatagtCTACCAATGGTGTAAGAAAAGTAATCTTGTTTTAAACAGACAATGATATTGTTTTTCTTAgcccgttggcagattattttgttgttttaagagAAAACgtacttaattttgacttaatatttctgaaaacaaaacaaccagttttacttgtctagaaaatgctaacaaatttaagaatttttagatattaggACTAGAAACTAGTGAAAAATGCCAAGTAAGAAAGGCATGGTCTTAAAATAGTTGTTTAcatcgtttttatttatttttattttttccgtagcttaatctaatctaatcttggAATAAGCACAACTGTATGAGTTTTTGCcagcaaataattaattaagcTCTAACTACAGACAGGTATCAATTTTGTCTTGCCTGTAAATGATTTTGGACTCTCAAAGTATCAGTAGCCATTACATTATATAAACCACCAACTGTACTCATTCATCTAAAAATAATTGactttaatgtaatacaaaagaaaaaaaaaggatgtgCCAGCATCTTAGAtgagtaaataaacaacaaattgtctttttttttaagtgaactatcttTTAAAAGACACCTCCAGTTCccaatataaaatgaaaaagctGTTCTGAAGAAGAGCGAACGATGGCTCAACGTGCAGTGGctaagagagcttaacgtgctgcaatttaagaaaacaagtGCAATTAAAAATCGCCAGCAAATTGAGAAAGAGAGATCTTCGTTGTTgagatatttatttgtttgacagcacacgtgctgcaaatcctcacaatgcaaacacaatttttaaaaaatgagctgcattctcacaacgcaaataaactaatgaagcgtgctgcattttctcacatcgCAAACAATTCCCGAAAAAgtactgcattttctcacaaagcaaaaacaatttacaaaaacgtgcagcattttcttacaacgcaaacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacgcgctgcattctcacaacacaaacacatttttaaaaacggGCTGCATTCTCACAgcacaaacaatttacaaaaacatgctgcattttctcacaagcgcaaacacatttttaaaaactactgcattttcccacaatgcaaacaatttatgtaaatatgttgcatttctcagaacacaaacaatttacgaaaatgttttgtgagaaaatgcagcattttcataaattgtttgtgttgtgaaaaaaaaaagcgtGTTTTcgtaattgtttgtgttgtgagaaaatacagCATGTTTTCATAAAATTGTTTGTGCTGTTAGAAAATGCAGCGTTTTCGTAATTTGTTTGCGATGTGTTTTCGTAAATTATTTATGTTGTGAGAAAGTTCAGCgtgttttcataaattgtttgcgttgtgaaaaaatgcaATATGTTTtcgtaatttgtttgcattgtgagaaaatgcagcgtgttttcgtaattgtttgtgttgtgagaaaatacagCATGTTTTCATAAAATTGTTTgtgctgtgagaaaatgcagcgtgttttcgtaaattgtttgtgttgtaagaaaatgcagcgtgttttcgttaattgtttgtgttgtgagaaaatgctgcgtttttataaattgtttgtgctgtgagaaaatgcagcgcacttttaaatgtgtttgcgttgttaggatttgcagcacgtgtgcAATTTGCTgccgttttttgtaattgcacgcGTTTTCTTACATTTTAGCAAGTTAAGCTCTCCTTattaacaacacaaaaagaaaacatttacttGAAGTGGCGATACTTAGGAGTAGAAACGGCAAGCAACATGTTAACGTAACAGACAGTTAAAATAGTTGTGTGCAACTATCCCAgtaatactgaaataaaacaatcaaataaaagcaaaatttacataaaaataaatcaagaagcCTTATCTCCTGCTCCAATTCCCACAATTCAAGCTATATCATTAGAAAACCAACTGGCAGACctggaaaaaaatgaaatataatggGACTAAATACAAGTTTGGAGATGTAAACCTACTGACGTCTGCATCCATGAACATTCACAGCTTAAAAAGTGTGTTTTCGCACGCGTGTCCCTTGTACTGTGAAGCGAACAAGCGATTACCGTTTTTTAAAATCGAACCGCTGTGCTTATTGCAGATGTTTTGAAGCCGGatgagtccaaatatctcaatCAATTGAAGACTTCAGATGTctttgcgtgtgtttgtgtggatatGAGCTAAAAATAAGGTCGGAGAATCCATAAAAGAGCGCTgaagttcagtaaaaaaaaaaaaaacactgaaggaGACATTCAGAAGTCTTTGCGTCTGGAATTCAGTGAGTATCGGAGCCCTTTCTGGTTGCGTTGGGTTATAATAAATCAAGAACTTCCATTTCCTTACGGTTAAAACCTGCTTGTGGAAAATGGTTTTGCATGAGCATATCTAGAGTGTGCGGAAACACAATACGCGAGGATTTGTTTGGAGGAGTTTCCTGGGTGTGTGTTTTGTCAAACGACGAGAAGCGCTGATTAGATTCACAACCAGTTCATACATACTGTGAGCTAAAGAAGGTGTAAACGAACTCCAGAAGAGCCCAAAAAGTTCCTTGCTTGCTGGAAATCAGATAGGAGatgtaaatcaaataaatcaaggACTTTCAGGCTCtttcacatacacatacacacacttagaCTCTGCTTGTTAAGGCAGTGGTGCTCCAGGAGTTTGCTGTGGGCTTCAGGCTGGGTGATGGCAGTGGAAAAGCTCCATCGCACACACAAACTTGAGTcttttgctcattttttttttttttttattcgtctCTGACCCCCAGCGGTCCTTATGGTCCTCAGCTCTCCTGTTATCCAGTCGCTCGTGAGCTCTCAGTCTCTGATTCTTCCTAGTCCCGCTTATTCGAAGGACATTAGATTTGCGGGCACCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036565 True 5214 lncRNA 0.35 2 15931394 15938307

Neighbor

gene id symbol gene type direction distance location
XLOC_017217 NA coding upstream 35744 15880642 ~ 15895650 (+)
XLOC_017216 faslg coding upstream 326384 15600167 ~ 15605010 (+)
XLOC_017215 si:dkey-86e18.1 coding upstream 352919 15565926 ~ 15578475 (+)
XLOC_017214 caiap coding upstream 366905 15560141 ~ 15564489 (+)
XLOC_017213 jun coding upstream 376788 15552657 ~ 15554606 (+)
XLOC_017219 angptl1a coding downstream 44175 15982482 ~ 16007636 (+)
XLOC_017220 zyg11 coding downstream 232541 16170848 ~ 16212016 (+)
XLOC_017221 NA coding downstream 311133 16249440 ~ 16265835 (+)
XLOC_017222 BX890559.1 coding downstream 341656 16279963 ~ 16283039 (+)
XLOC_017223 BX890568.1 coding downstream 489483 16427790 ~ 16427905 (+)
XLOC_017212 NA non-coding upstream 401949 15528971 ~ 15529445 (+)
XLOC_017211 NA non-coding upstream 645248 15285264 ~ 15286146 (+)
XLOC_017209 NA non-coding upstream 816493 15111736 ~ 15114901 (+)
XLOC_017208 NA non-coding upstream 872689 15055996 ~ 15058705 (+)
XLOC_017225 AL935145.3 non-coding downstream 712818 16651125 ~ 16651223 (+)
XLOC_017226 NA non-coding downstream 731558 16669865 ~ 16689501 (+)

Expression


Co-expression Network