XLOC_017235 (cdh2)


Basic Information

Item Value
gene id XLOC_017235
gene name cdh2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 17581881 ~ 17819238 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034309
GTCTGCAGTCATGTCTGGTTTCTCTATGTGTCCTGCTTTTcccaatagacccttttcacattttcatgTTTCTTAGCAGCAGAAGTCATAGTTTTTAAAGCGCAGTCAGCAACGGCACCACAGGAGGGGTCCCAGGGGTCCCAGCCACCTAGGTCACTGTCTCTCTTCAGCTCTGGTGGCGGTCCAGGGCACAGGGGCGATGCCATGTCAGCCTGGTTTCACCGAGAACGAGTACAACGTCATGACAGCCGACGTCATCACCGAGGGACAAGTTCTGCTCAAAGTGGATTTTGTGGACTGTGGCAGAGGTTCCGGCCTGCGCTTTGAGAGTGGCGACCCTGCAGATTTCCGGATAGACGCCGATGGGACAGTTATGGCAGCACGGACACTTCAGCTCACCGACAGAAAGGGGCAGAGCTTGGAGATTAAAGCCAAGGATGAGAATTCTCAAGAGCAGTGGATGGTACACATCAACTTCACTCAACCCAAACAGGTGCCAGTGATACTGTTTCCTCGGCACAGTGTGCTTGTCAAGGGCGACGACAGTGTGAATCGCGTGAAAAGAGACTGGGTCATTCCTCCTGTCAACGTGCTGGAGAACTCCAGAAAACAATTCCCCGAAGAGCTTGTGAAAatccAGTCTGATAAGGACAAGAGCAACACGCTGCGCTACAGTGTGACCGGACCAGGAGCAGACCAAAACCCTACTGGCCTGTTTATCATCGACCCCATTTCAGGACTTCTCTCTGTCACCAAACCGCTGGACAGAGAACACATCCCCAACTTTCATCTGCGTGCTCATGCAGTGGACATCAATGGAAACCAGATGGAGAATCCCATCGACATCATCATCAATGTCATCGATATGAATGACAACCGGCCAGAGTTCACACACCAGATCTGGAATGGGACCGTGGATGAGGGTGCCAAACCAGGAACATTCGTAATGACAGTGACCTCCCAGGATAAGGATGACCCAAATACAGCCAACGGGATGCTGCGATACAAAATCCTCTCTCAGACCCCAGAGAGCCCCTCATCCAACATGTTCACTATCAACAACAAAACCGGCAAAATCATCACAGTAGCTGCAGGCCTGGACCGTGAGAAGGTGCCTCAGTACACCCTGATCATCCAGGCTACCGATATGGAAGGAAACCCCACGTATGGTCTGTCCAACACCGCCACTGCTGTCATACGCCTGCTGGATGTCAATGACAACGCTCCCGAGTTCACCCGAGAGACTTTCCATGGTGAGGTCCCAGAGAACCGTGTGAATGTGATAGTGACCAATCTCACCGTGACCGACAAAGATGAACCGGGGACTCCAGCCTGGAATGCTGTGTACCGGATCATATCCGGGGACCCGACCGGACGCTTCTCCATTCCTACTGACCCTGTCACAAATGAAGGCCTTGTCACCGTTGTTAAGCCAGTTGATTTCGAGATGAATCGATCATTCATGCTGACTGTTGTCGCTGACAATGAAGTGCCACTAGCGAGTGGAATCCATCGCACACGCCAGTCTACAGCCACCGTATCCATCCGCGTCATCGATGTGAACGAAAGCCCCAACTTTGACCCCAACCCCAAACAGATCAAACTGGAGGAGGGTCTTCCGCAGTGGTCAATGCTAACGACTTTCACAGCTCATGATCCAGACAGATATATGCAGCAGACTATTAGttaCTCTAAATTATACGACCCCGCCAACTGGTTGGAGATCGACCCAAACAACGGACGAATTTCCACCATTGCTGTTTTGGATCGAGAATCTCCTTACGTGAAAAATAACCTTTACAACGCCACATTCATGGCTTCAGACAATGGTGTGCCCCGTGCAAGTGGGACTGGAACACTGCAGATTTACTTGTTGGACATAAATGATAACGCACCTCGCGTCTTCCCACAAGAAGCAGAAGTGTGTGAGCGTCCCGAACCCAATGCCATTAATATCACAGCAGTAGACGGAGATCTCAATCCCAACGCTGGACCCTACGCTTTTGAACTGCCCAATCGGCCCTCAGACATCCGAAGAAACTGGACACTGACCCGAATCAGTGGCGATCATGCTCAGCTGAGTCTGAAGATTAGTTACCTGGAAAGTGGCATTTACGAGCTACCCATCAGCATCACAGACTCGGGTAACCTGCCCATGTCCAACACCACTTACCTGCGCATTAAAGTGTGCCAGTGCGATCATCATGGTGACTGTGTGGACATGGAGCGCATCATGGCAGCCGGGCTGGGCACCGGAGCCATCATCGCCATACTTATCTGCATCATCATTCTGCTGGTGCTGGTGTTGATGTTTGTGATGTGGATGAAGAGACGGGATAAAGAGAGACAGGCCAAGCAGCTGCTGATCGATCCAGAGGACGATGTGCGAGACAACATACTTAAATACGACGAGGAGGGCGGCGGAGAGGAAGACCAGGACTATGATCTGAGCCAGCTGCAGCAGCCTGATACTCTGGAGCCAGACATGATCAAGCCTGTCGGGATCCGCCGGCTGGACGAGCGACCGATGCACTCGGAGCCCAACTACCCCATCCGCTCAGCCGCTCCACATCCCGGAGACATAGGAGAGTTCATCCACGAGGGCCTCAAGGCAGCCGACACCGATCCCACGGCCCCTCCGTATGACTCCCTGCTGGTGTTTGACTACGAGGGCAGCGGCTCCACGGCCGGCTCACTAAGCTCCCTTCACTCGTCCAGCAGCGGAGGAGACCAGGACTATGACTACCTCAACGATTGGGGCCCTCGCTTCCGCAAACTCGCCGACATGTACGGAGGTAACGACGACTAG
>TCONS_00034310
TTCCTTTTGTTGTAGTGAAGAAGGCGGAGTCTTGTCTTCTTCGCTCTGACTTCCGGAGGCTGAAAGGGGTGACATAAGGAAAGGAGCCCCCTTCTTTGCCGCAGTACCAATGGGTGCGGCTAGAGGGCGTCATTGAGAGCGTGGCGCTGCCGTTGAACAGCGAGAGCGAGCGGAGCTTCAGTACCAGACCGAGCGCAGCACGGATCAGTGCCAGAGAGAGACGGAGGAACGATTCTGTCGCTTCATGCCGCCGCTACCGTACGGAACATTATAACCTAGCGGAAAACGGCCAGCTCTATCGGTTTCTTTATACAGAACGGAATTTAAACGATGTACCGTTCCGGAGGCGTGATGCTGGGGCTTCTCGCCGCTCTGCAGGTGGCGGTCCAGGGCACAGGGGCGATGCCATGTCAGCCTGGTTTCACCGAGAACGAGTACAACGTCATGACAGCCGACGTCATCACCGAGGGACAAGTTCTGCTCAAAGTGGATTTTGTGGACTGTGGCAGAGGTTCCGGCCTGCGCTTTGAGAGTGGCGACCCTGCAGATTTCCGGATAGACGCCGATGGGACAGTTATGGCAGCACGGACACTTCAGCTCACCGACAGAAAGGGGCAGAGCTTGGAGATTAAAGCCAAGGATGAGAATTCTCAAGAGCAGTGGATGGTACACATCAACTTCACTCAACCCAAACAGGTGCCAGTGATACTGTTTCCTCGGCACAGTGTGCTTGTCAAGGGCGACGACAGTGTGAATCGCGTGAAAAGAGACTGGGTCATTCCTCCTGTCAACGTGCTGGAGAACTCCAGAAAACAATTCCCCGAAGAGCTTGTGAAAatccAGTCTGATAAGGACAAGAGCAACACGCTGCGCTACAGTGTGACCGGACCAGGAGCAGACCAAAACCCTACTGGCCTGTTTATCATCGACCCCATTTCAGGACTTCTCTCTGTCACCAAACCGCTGGACAGAGAACACATCCCCAACTTTCATCTGCGTGCTCATGCAGTGGACATCAATGGAAACCAGATGGAGAATCCCATCGACATCATCATCAATGTCATCGATATGAATGACAACCGGCCAGAGTTCACACACCAGATCTGGAATGGGACCGTGGATGAGGGTGCCAAACCAGGAACATTCGTAATGACAGTGACCTCCCAGGATAAGGATGACCCAAATACAGCCAACGGGATGCTGCGATACAAAATCCTCTCTCAGACCCCAGAGAGCCCCTCATCCAACATGTTCACTATCAACAACAAAACCGGCAAAATCATCACAGTAGCTGCAGGCCTGGACCGTGAGAAGGTGCCTCAGTACACCCTGATCATCCAGGCTACCGATATGGAAGGAAACCCCACGTATGGTCTGTCCAACACCGCCACTGCTGTCATACGCCTGCTGGATGTCAATGACAACGCTCCCGAGTTCACCCGAGAGACTTTCCATGGTGAGGTCCCAGAGAACCGTGTGAATGTGATAGTGACCAATCTCACCGTGACCGACAAAGATGAACCGGGGACTCCAGCCTGGAATGCTGTGTACCGGATCATATCCGGGGACCCGACCGGACGCTTCTCCATTCCTACTGACCCTGTCACAAATGAAGGCCTTGTCACCGTTGTTAAGCCAGTTGATTTCGAGATGAATCGATCATTCATGCTGACTGTTGTCGCTGACAATGAAGTGCCACTAGCGAGTGGAATCCATCGCACACGCCAGTCTACAGCCACCGTATCCATCCGCGTCATCGATGTGAACGAAAGCCCCAACTTTGACCCCAACCCCAAACAGATCAAACTGGAGGAGGGTCTTCCGCAGTGGTCAATGCTAACGACTTTCACAGCTCATGATCCAGACAGATATATGCAGCAGACTATTAGttaCTCTAAATTATACGACCCCGCCAACTGGTTGGAGATCGACCCAAACAACGGACGAATTTCCACCATTGCTGTTTTGGATCGAGAATCTCCTTACGTGAAAAATAACCTTTACAACGCCACATTCATGGCTTCAGACAATGGTGTGCCCCGTGCAAGTGGGACTGGAACACTGCAGATTTACTTGTTGGACATAAATGATAACGCACCTCGCGTCTTCCCACAAGAAGCAGAAGTGTGTGAGCGTCCCGAACCCAATGCCATTAATATCACAGCAGTAGACGGAGATCTCAATCCCAACGCTGGACCCTACGCTTTTGAACTGCCCAATCGGCCCTCAGACATCCGAAGAAACTGGACACTGACCCGAATCAGTGGCGATCATGCTCAGCTGAGTCTGAAGATTAGTTACCTGGAAAGTGGCATTTACGAGCTACCCATCAGCATCACAGACTCGGGTAACCTGCCCATGTCCAACACCACTTACCTGCGCATTAAAGTGTGCCAGTGCGATCATCATGGTGACTGTGTGGACATGGAGCGCATCATGGCAGCCGGGCTGGGCACCGGAGCCATCATCGCCATACTTATCTGCATCATCATTCTGCTGGTGCTGGTGTTGATGTTTGTGATGTGGATGAAGAGACGGGATAAAGAGAGACAGGCCAAGCAGCTGCTGATCGATCCAGAGGACGATGTGCGAGACAACATACTTAAATACGACGAGGAGGGCGGCGGAGAGGAAGACCAGGACTATGATCTGAGCCAGCTGCAGCAGCCTGATACTCTGGAGCCAGACATGATCAAGCCTGTCGGGATCCGCCGGCTGGACGAGCGACCGATGCACTCGGAGCCCAACTACCCCATCCGCTCAGCCGCTCCACATCCCGGAGACATAGGAGAGTTCATCCACGAGGGCCTCAAGGCAGCCGACACCGATCCCACGGCCCCTCCGTATGACTCCCTGCTGGTGTTTGACTACGAGGGCAGCGGCTCCACGGCCGGCTCACTAAGCTCCCTTCACTCGTCCAGCAGCGGAGGAGACCAGGACTATGACTACCTCAACGATTGGGGCCCTCGCTTCCGCAAACTCGCCGACATGTACGGAGGTAACGACGACTAGCTTACGCCATCACCGCAGGACCACTGAACGACAAGTAAGAACCGGAGGAGGAGGAAAATttacaagaaaacaaaaaacatcaaaaaaacagtgtggcacttttttttttaaatcgcggGACGTGGACAGTGTGCAGAATCAAAACAATGAAGAAAACAATATACCCTAGAGAGTGCAAGAAACGAAGACTGAGATAAGAAATTGGAAGGAAGATCAGCAATGGCAACAAAACCAGGTGTTTCAGAAGGCCTGCGTTGTAATGAAGGAATCTGCCGAGTTTTGGTTGAGTCCAGGATTTTATGCGCCTAAGTTTTGAAGGATCATCGGTACGAAACGTATGAAGGAACGCTTCAAGAACGTTAAATGAATGCTAAGTTACACTTGAATCTCACAGTACAGAAGCACTGGGATATTACGTgcctttttgtacattttttttctttcattttgacatttttctttctttttcggtCTTTGTTTATTTGATCTGATGATGTTTTACTGTTCAATGGCTATGGTGGCTCAGAGGTTTGGAgtgttattttaattcttttttcattTACGTTGTGAGCCTGTTTATAACATTTACGCTCCGACAtgcttttgtttgcatttttcaCCATCACGCTGTTCGTTCACGTCACGTATCAAAATGAAGACTTTGAAAGAATGAGAGCGGCTAGACAGAGAGAACAGCTTTGTACAGTACGCTAGAAAATAGATTTCAGTTTGTCATTTTATTTCACGTTTtcctgttttttatatatatatatctatatatatatatatatatttacattgacAATTTTTTCCACCGAAACGTTAACTTATGCAGCTGGTTGCAAAATGGGAGAcgagcattattattatttggtagcagaacttttttttttttctctctctctctatctctgcaTTTTTTTGAAGTGATTTAGTATTTTGCAAATGAAAGCATTCAAATGTCATCTGCCTTAGTCATCCTGGTATTCTTTCATGCCTggtattctttcatttttttactcCACTGTAAATTAAATGGTGTGTACATAGTTTTTTGTTTCGTTTCTCCTCTTTTGATGTAGTCTACGATGAAGAACAGGGCGTGAAGAACTTGTATATGTATAATTTGGACTACAGACAAAAGgaattttttgcatgtttttatctTTTCCGTATAAAACAGTCTTTCTGAAATTTATTTACACTCAAATAAAGAAATGCCCACCTTGAAGGAGACTACAGCGATTAAGTGATACAGAAGTTTGGTCCAGATACCCGTTGCTTTCATCCTCCCCTTTTCATAGGGTCACATTCCTTTTCGGTTTCACCCCTTTTGGCCCAATTTATGACCTTCCGTTTGCCCGTTCTCTGATTTCATCACTTGACGTCCTTCGTCAAGGAGACCACGTTGACCATTTCTTTTGCTACGTTCTGCAATTCCATTGTCTTCTCCCCCCGGGCCACTTTCATGGATCAAAGAGGTTGACTGACGTTCAAGGCTCCTAAATGATCCTTTTGGATCTTCATGTCCGAACGAATCTAATGGTGGACTGAAGCCCTCATCATAACTGTCTCTGCCTGttagaaagctgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtatcactgGATGCGTCAGAGAGGGCCAATTAAAAGAGCAGGATGGAAAGTACGAGGCCAGTCCACTCACGAGGCTCACAGCCATAAGATGATTAACAGCTTTTTAATGAACGATGGCTGTCCAGAGTTCTGTGGGCTCTGTTTGCAATTACTTGTTGATATTATGACCCATTGCAGCccaaatgaccaataaaagtctaaTTTTGGAAA
>TCONS_00036380
GTACCAGACCGAGCGCAGCACGGATCAGTGCCAGAGAGAGACGGAGGAACGATTCTGTCGCTTCATGCCGCCGCTACCGTACGGAACATTATAACCTAGCGGAAAACGGCCAGCTCTATCGGTTTCTTTATACAGAACGGAATTTAAACGATGTACCGTTCCGGAGGCGTGATGCTGGGGCTTCTCGCCGCTCTGCAGGTGGCGGTCCAGGGCACAGGGGCGATGCCATGTCAGCCTGGTTTCACCGAGAACGAGTACAACGTCATGACAGCCGACGTCATCACCGAGGGACAAGTTCTGCTCAAAGGTAAACAAAGACGTTTTCTTTACATGCATACTTAGAATAAACGGACCAATCCAAGCGGTGAGGCAGAGCGCTCCCTTACCAGGCTTGGGTTTCCAGTGTGAAGAGAAAAAGAGTTGGGGGAAGGGTGGGCTTTATGCTTGTATGTGAAAGAACGAGAGGGGGAGGAGGGTTAAGTGTTAGGGTTGCTTTAGTAGGGGGTGTTTATAGAGGGTGATATGTGTGCGAGAGAAAGaaaggagcaggaggaggagaaCAGCTCTGTGTTTTGGTGGAATGTGTTTTGAAGCTTCACAGTGTGAAGTATCTGGGTGCTTGAATCACCCTCCCCCACTGTGGATGAATC
>TCONS_00034311
GAATTCTCAAGAGCAGTGGATGGTACACATCAACTTCACTCAACCCAAACAGGTGCCAGTGATACTGTTTCCTCGGCACAGTGTGCTTGTCAAGGGCGACGACAGTGTGAATCGCGTGAAAAGAGACTGGGTCATTCCTCCTGTCAACGTGCTGGAGAACTCCAGAAAACAATTCCCCGAAGAGCTTGTGAAAatccAGTCTGATAAGGACAAGAGCAACACGCTGCGCTACAGTGTGACCGGACCAGGAGCAGACCAAAACCCTACTGGCCTGTTTATCATCGACCCCATTTCAGGACTTCTCTCTGTCACCAAACCGCTGGACAGAGAACACATCCCCAACTTTCATCTGCGTGCTCATGCAGTGGACATCAATGGAAACCAGATGGAGAATCCCATCGACATCATCATCAATGTCATCGATATGAATGACAACCGGCCAGAGTTCACACACCAGATCTGGAATGGGACCGTGGATGAGGGTGCCAAACCAGGAACATTCGTAATGACAGTGACCTCCCAGGATAAGGATGACCCAAATACAGCCAACGGGATGCTGCGATACAAAATCCTCTCTCAGACCCCAGAGAGCCCCTCATCCAACATGTTCACTATCAACAACAAAACCGGCAAAATCATCACAGTAGCTGCAGGCCTGGACCGTGAGAAGGTGCCTCAGTACACCCTGATCATCCAGGCTACCGATATGGAAGGAAACCCCACGTATGGTCTGTCCAACACCGCCACTGCTGTCATACGCCTGCTGGATGTCAATGACAACGCTCCCGAGTTCACCCGAGAGACTTTCCATGGTGAGGTCCCAGAGAACCGTGTGAATGTGATAGTGACCAATCTCACCGTGACCGACAAAGATGAACCGGGGACTCCAGCCTGGAATGCTGTGTACCGGATCATATCCGGGGACCCGACCGGACGCTTCTCCATTCCTACTGACCCTGTCACAAATGAAGGCCTTGTCACCGTTGTTAAGCCAGTTGATTTCGAGATGAATCGATCATTCATGCTGACTGTTGTCGCTGACAATGAAGTGCCACTAGCGAGTGGAATCCATCGCACACGCCAGTCTACAGCCACCGTATCCATCCGCGTCATCGATGTGAACGAAAGCCCCAACTTTGACCCCAACCCCAAACAGATCAAACTGGAGGAGGGTCTTCCGCAGTGGTCAATGCTAACGACTTTCACAGCTCATGATCCAGACAGATATATGCAGCAGACTATTAGttaCTCTAAATTATACGACCCCGCCAACTGGTTGGAGATCGACCCAAACAACGGACGAATTTCCACCATTGCTGTTTTGGATCGAGAATCTCCTTACGTGAAAAATAACCTTTACAACGCCACATTCATGGCTTCAGACAATGGTGTGCCCCGTGCAAGTGGGACTGGAACACTGCAGATTTACTTGTTGGACATAAATGATAACGCACCTCGCGTCTTCCCACAAGAAGCAGAAGTGTGTGAGCGTCCCGAACCCAATGCCATTAATATCACAGCAGTAGACGGAGATCTCAATCCCAACGCTGGACCCTACGCTTTTGAACTGCCCAATCGGCCCTCAGACATCCGAAGAAACTGGACACTGACCCGAATCAGTGGCGATCATGCTCAGCTGAGTCTGAAGATTAGTTACCTGGAAAGTGGCATTTACGAGCTACCCATCAGCATCACAGACTCGGGTAACCTGCCCATGTCCAACACCACTTACCTGCGCATTAAAGTGTGCCAGTGCGATCATCATGGTGACTGTGTGGACATGGAGCGCATCATGGCAGCCGGGCTGGGCACCGGAGCCATCATCGCCATACTTATCTGCATCATCATTCTGCTGGTGCTGGTGTTGATGTTTGTGATGTGGATGAAGAGACGGGATAAAGAGAGACAGGCCAAGCAGCTGCTGATCGATCCAGAGGACGATGTGCGAGACAACATACTTAAATACGACGAGGAGGGCGGCGGAGAGGAAGACCAGGACTATGATCTGAGCCAGCTGCAGCAGCCTGATACTCTGGAGCCAGACATGATCAAGCCTGTCGGGATCCGCCGGCTGGACGAGCGACCGATGCACTCGGAGCCCAACTACCCCATCCGCTCAGCCGCTCCACATCCCGGAGACATAGGAGAGTTCATCCACGAGGGCCTCAAGGCAGCCGACACCGATCCCACGGCCCCTCCGTATGACTCCCTGCTGGTGTTTGACTACGAGGGCAGCGGCTCCACGGCCGGCTCACTAAGCTCCCTTCACTCGTCCAGCAGCGGAGGAGACCAGGACTATGACTACCTCAACGATTGGGGCCCTCGCTTCCGCAAACTCGCCGACATGTACGGAGGTAACGACGACTAGCTTACGCCATCACCGCAGGACCACTGAACGACAAGTAAGAACCGGAGGAGGAGGAAAATtt

Function

symbol description
cdh2 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including animal organ development; embryonic morphogenesis; and nervous system development. Located in perinuclear region of cytoplasm and presynaptic membrane. Part of catenin complex. Is expressed in several structures, including germ ring; immature eye; mesoderm; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in agenesis of corpus callosum, cardiac, ocular, and genital syndrome; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 14. Orthologous to human CDH2 (cadherin 2).

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0090248 cell migration involved in somitogenic axis elongation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:2000178 negative regulation of neural precursor cell proliferation biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001764 neuron migration biological_process
GO:0021577 hindbrain structural organization biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0070285 pigment cell development biological_process
GO:0021591 ventricular system development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0001502 cartilage condensation biological_process
GO:0007275 multicellular organism development biological_process
GO:0042476 odontogenesis biological_process
GO:0042478 regulation of eye photoreceptor cell development biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0045198 establishment of epithelial cell apical/basal polarity biological_process
GO:0021915 neural tube development biological_process
GO:0042246 tissue regeneration biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048331 axial mesoderm structural organization biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0034332 adherens junction organization biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0097475 motor neuron migration biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0035142 dorsal fin morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0010001 glial cell differentiation biological_process
GO:0060271 cilium assembly biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007398 ectoderm development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0044331 cell-cell adhesion mediated by cadherin biological_process
GO:0007416 synapse assembly biological_process
GO:0007420 brain development biological_process
GO:0060030 dorsal convergence biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007158 neuron cell-cell adhesion biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0099060 integral component of postsynaptic specialization membrane cellular_component
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0045177 apical part of cell cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0030027 lamellipodium cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0014704 intercalated disc cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0099059 integral component of presynaptic active zone membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko03036 Chromosome and associated proteins
ko04515 Cell adhesion molecules
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-990415-171 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including animal organ development; embryonic morphogenesis; and nervous system development. Located in perinuclear region of cytoplasm and presynaptic membrane. Part of catenin complex. Is expressed in several structures, including germ ring; immature eye; mesoderm; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in agenesis of corpus callosum, cardiac, ocular, and genital syndrome; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 14. Orthologous to human CDH2 (cadherin 2).

Ensembl:

ensembl_id ENSDARG00000018693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034309 False 2809 mRNA 0.53 16 17581881 17817397
TCONS_00034310 False 4853 mRNA 0.48 16 17739923 17819238
TCONS_00036380 False 650 lncRNA 0.52 2 17740103 17743920
TCONS_00034311 True 2429 mRNA 0.53 14 17783404 17817458
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_017234 NA coding upstream 686877 16887843 ~ 16895004 (+)
XLOC_017233 nfkbiaa coding upstream 697144 16881883 ~ 16884737 (+)
XLOC_017232 NA coding upstream 716462 16862256 ~ 16865419 (+)
XLOC_017231 calm1b coding upstream 806623 16743056 ~ 16775258 (+)
XLOC_017230 psmc1b coding upstream 840924 16721933 ~ 16740957 (+)
XLOC_017236 aqp4 coding downstream 344117 18163355 ~ 18186784 (+)
XLOC_017237 kctd1 coding downstream 390657 18209895 ~ 18256959 (+)
XLOC_017238 taf4b coding downstream 441120 18260358 ~ 18296294 (+)
XLOC_017239 znf521 coding downstream 506318 18325556 ~ 18330250 (+)
XLOC_017240 si:dkeyp-93h6.1 coding downstream 568120 18387358 ~ 18389569 (+)
XLOC_017229 NA non-coding upstream 860357 16719769 ~ 16721524 (+)
XLOC_017226 NA non-coding upstream 892380 16669865 ~ 16689501 (+)
XLOC_017227 AL935145.4 non-coding upstream 910326 16671441 ~ 16671555 (+)
XLOC_017241 NA non-coding downstream 570873 18390111 ~ 18392925 (+)
XLOC_017243 BX510992.1 non-coding downstream 740675 18559913 ~ 18563299 (+)
XLOC_017247 NA non-coding downstream 977257 18796495 ~ 18801550 (+)
XLOC_017255 BX842684.1 non-coding downstream 1398660 19217898 ~ 19218029 (+)
XLOC_017256 BX842692.2 non-coding downstream 1538420 19357658 ~ 19357772 (+)

Expression

Expression of XLOC_017235(cdh2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Expression of XLOC_017235(cdh2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network