XLOC_017279 (BX276098.1)


Basic Information

Item Value
gene id XLOC_017279
gene name BX276098.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 21478028 ~ 21545979 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034403
TTTAgagcttttttttgtaaaagagttagaaacagttttataaaaatattttttaaaaaggtttttggtttttatttatgtatgtaacaTTTTGTTAATAAGATAAGAAGAATAAGACAATATGTTTTCCTTTTATGTATAGCTCCTGTTTtgtaacaaacaaaacattttcacacAGTAAAGAAAAGTCTTTATCAACTTTCTCAATTAcaaaaagagaaacattttttccaATATTAGAATTACTGCATTGCCCAAATAAGTGAAATAGGGACTCAGAATAGTGCTTACAAAATCAACAATTTAtcaatatattgtttatatatctTACTTAGAGAGAATTGACTGGTATGTACCATGAATAATTCTAAAAGGTGCAGTATTTTTCATTGAGAAAAAGCCCGTCTAATGACATCATACTTCAGGAAGTGACATCTTTTGGAGGGAAAGCAACAAACCGCGAACGTAAGAGTTAAAAGTGGGCCCGAATGTGGCATGAGTGACCTACATGTGTGATGGAGTCTATAAAGTCACTCCATCCATGTCTCCCTGTGCAAGACGACTGCATGTGGCTGAAAGTTGATCCCAGATTCCTGGAGTGTTTCTCGGCAGTCAAGGACGTCTGACCCGCACTCATTTATACAACATTTTGTGCCTGTCATGATGACCCGAAATGGAAGGTTTCCACAaccatttagcagatgcttcCATCCAAAACGACAGTTTGCAGATTGCAGGCACGGTCCCTTAAGAGCTTCTTGCTTAAGGGCACATTTTGGGATCTCAGACACTCTCCAGTTACACGATCACCTCTATATTTTGGACACAGTCTACTGTACCCATAGAGAAAACACTAAATCATTCATGCCCCACATTATGCTGTATCATGGCCC
>TCONS_00036581
TGACATCATACTTCAGGAAGTGACATCTTTTGGAGGGAAAGCAACAAACCGCGAACGCATGAGTGACCTACATGTGTGATGGAGTCTATAAAGTCACTCCATCCATGTCTCCCTGTGCAAGACGACTGCATGTGGCTGAAAGTTGATCCCAGATTCCTGGAGTGTTTCTCGGCAGTCAAGGACGTCTGACCCGCACTCATTTATACAACATTTTGTGCCTGTCATGATGACCCGAAATGGAAGCAGGACAGGTGGACAATAAGACCAAATTGACCTTGAGCCATGCTGTTATAAGAACCACCAATACAGAAGTTTGTGAAAAGGAGGGAATGCATGTATATGGCCCGCACTGTCCCACAGTGACCTCATGGGGTGACGTGTGACCTCTCCCGCTGCCCAGATCCTCAGAGACGCACCGTTGAAGTGTAACGGCACATAGAGCCCAGCCTGAACTCTGACCCCTGCCTCCCCAGGAGCCTTGGCTCTGTCGGAGACGATTCAAATCACAGGGACTGTGGCTATCAATCAAACACGGGGACCGGAGCTCAACCGAAGAATATGTCAAGAAGCCATTTTAACATGTCAGGTTGTAGGCCGGCGCAAGCATATGGCCCATTTACTCCTGATGATAGACATGGAACACATCTGTTTGTTCAACGCAGCGAGACACGTCCCGTAAGATCTGAAAGAAGTCTTGAATAAGCCCAAGCCTACGCCTCGAGGGACGGGTTTCTTAACTGGGGGAAGGGGTGATTCTGTTCAGCCTTATAAAGCTTTCATGAAAAACCCCCAAGAACAGAGGGTCACGCTATTGATTGAACCTGCGAGAGGAAGCAGTTGTGACCTATAATTCTTACCAAGAGCATGACACCGAGCTCAAAGGGTACATGTATACGCTGTTGACTTCCCTGTGAAATGTAGATGGGCAGCTGGGATAGCGGAGACGTAACGGTGATCCCTGCGTCACGTCTGGGACGGTTGGAATGTTTTTTCAAAATGGAGTTGTATTTGTCCATCTTGGTCTATTTAAATCCTCT
>TCONS_00036582
CATCTTTTGGAGGGAAAGCAACAAACCGCGAACGTAAGAGTTAAAAGTGGGCCCGAATGTGGCATGAGTGACCTACATGTGTGATGGAGTCTATAAAGTCACTCCATCCATGTCTCCCTGTGCAAGACGACTGCATGTGGCTGAAAGTTGATCCCAGATTCCTGGAGTGTTTCTCGGCAGTCAAGGACGTCTGACCCGCACTCATTTATACAACATTTTGTGCCTGTCATGATGACCCGAAATGGAAGGGCTCCACTCCATCCAGGTTTATTTATGACAGCAAACAGCCATCCTGCTGCCTGCACTTCAACAGTCTGAGGATGTTTCTGATGTATCAAATATCAGACAGAGTTCCTGATGGTGTCTTCAGTCTGACTGCAGAGTAAAGGGAGGAGCTGATCTGCAGCATCTCCTCTCAGTGTGACCTCTGTCAAAGACACACTCTGATGAAACTGTGGCTAATATTAACTCAGGTTGACTCAGGCCAAGTTGGTTTGATTCAGGTTAACTGAGtgattgatgtttcccagtacagggttgcagctggaagggcatccgctgtgtaacacatatgctggaatagttggcggtttattcttcTGTAGccacctctgataaataagagaaagagactaagctgaaggaaaatgaatgaatgaacaaatgaataaattatttatttttaaaggggATGAGAAAAGCTGGGCAggctttttaagttttttaataatattaattgtttagaattaatattttatagccttacctattaaacattatttttctaAGTGTGATTTTGTGCTGAAAATGTTGTTGCTTATCAAACACAGCCTTAgccatgcatattaatgatctgaATGCTACGTACATGCGTCTGGTTTCTCTTAATGACGTCAGGTCCGGATGAACGACCTAAAGTAGTCATACATGCAAATGCGTAGGACATGGACCGGAAGTCTTGTCACAGATTGTTTTGTACTCTGATCTGCCTGTTGTCCACTAGGCTCTTATACTCGTGGAATTTACATGATAACAAGTTAACATTGTTCTCTGAGGCTAACAGTATGTCCATTTACATATACTGATCTCTTGTTATGCTACTATGCCTTGGTATACCCAAATTTTaattatagggcacctttaaagAGTGATTCATTAAAAAGTTGATTTAGAAATGAAATGTGACCttttttgtattactttttaaaacattcaatAAGATTCATTGAAACAGATTCATTCAGGAACAAAACACTACAGAATTGTCCCTTTGTTGTACAAACATCCCTCTGACTTTGTTTGGagctactgtattttcattaaagatACAGGTAAAACAGgcaatacataatttaaaatgtcTGTTAAACTTGTATCACTAAATATATTGTGATTACATTCCTGTGCTGATCTTCATAACTAAAGCTTTGATCATGCTGTGAATGCTTTTGGACTCTTAAGACTTTTTTTGACTGAAATGATTGCAG
>TCONS_00036583
caagaaggtcgctggttcgagcctcagctgggtcagttggcatttctagaGTTTCCATGTTCACCCACATgtgcgcgtgggtttcctccgggtgctctggtttccacacatgccaaagacgtggtacagGCATGAGTGACCTACATGTGTGATGGAGTCTATAAAGTCACTCCATCCATGTCTCCCTGTGCAAGACGACTGCATGTGGCTGAAAGTTGATCCCAGATTCCTGGAGTGTTTCTCGGCAGTCAAGGACGTCTGACCCGCACTCATTTATACAACATTTTGTGCCTGTCATGATGACCCGAAATGGAAGGGCTCCACTCCATCCAGGTTTATTTATGACAGCAAACAGCCATCCTGCTGCCTGCACTTCAACAGTCTGAGGATGTTTCTGATGTATCAAATATCAGACAGAGTTCCTGATGGTGTCTTCAGTCTGACTGCAGAGTAAAGGGAGGAGCTGATCTGCAGCATCTCCTCTCAGTGTGACCTCTGTCAAAGACACACTCTGATGAAACTGTGGCTAATATTAACTCAGGTTGACTCAGGCCAAGTTGGTTTGATTCAGGTTAACTGAGtgattgatgtttcccagtacagggttgcagctggaagggcatccgctgtgtaacacatatgctggaatagttggcggtttattcttcTGTAGccacctctgataaataagagaaagagactaagctgaaggaaaatgaatgaatgaacaaatgaataaattatttatttttaaaggggATGAGAAAAGCTGGGCAggctttttaagttttttaataatattaattgtttagaattaatattttatagccttacctattaaacattatttttctaAGTGTGATTTTGTGCTGAAAATGTTGTTGCTTATCAAACACAGCCTTAgccatgcatattaatgatctgaATGCTACGTACATGCGTCTGGTTTCTCTTAATGACGTCAGGTCCGGATGAACGACCTAAAGTAGTCATACATGCAAATGCGTAGGACATGGACCGGAAGTCTTGTCACAGATTGTTTTGTACTCTGATCTGCCTGTTGTCCACTAGGCTCTTATACTCGTGGAATTTACATGATAACAAGTTAACATTGTTCTCTGAGGCTAACAGTATGTCCATTTACATATACTGATCTCTTGTTATGCTACTATGCCTTGGTATACCCAAATTTTaattatagggcacctttaaagAGTGATTCATTAAAAAGTTGATTTAGAAATGAAATGTGACCttttttgtattactttttaaaacattcaatAAGATTCATTGAAACAGATTCATTCAGGAACAAAACACTACAGAATTGTCCCTTTGTTGTACAAACATCCCTCTGACTTTGTTTGGagctactgtattttcattaaagatACAGGTAAAACAGgcaatacataatttaaaatgtcTGTTAAACTTGTATCACTAAATATATTGTGATTACATTCCTGTGCTGATCTTCATAACTAAAGCTTTGATCATGCTGTGAATGCTTTTGGACTCTTAAGACTTTTTTTGACTGAAATGATTGCAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034403 False 893 lncRNA 0.37 3 21478028 21545979
TCONS_00036581 False 1037 lncRNA 0.49 3 21478437 21524215
TCONS_00036582 False 1487 lncRNA 0.39 3 21478460 21492327
TCONS_00036583 True 1555 lncRNA 0.40 3 21479318 21492327

Neighbor

gene id symbol gene type direction distance location
XLOC_017278 jag2b coding upstream 2408 21391181 ~ 21475620 (+)
XLOC_017277 nudt14 coding upstream 135657 21268795 ~ 21342371 (+)
XLOC_017276 BX248104.1 coding upstream 283264 21194649 ~ 21194764 (+)
XLOC_017275 NA coding upstream 294267 21177983 ~ 21183761 (+)
XLOC_017273 NA coding upstream 301470 21020334 ~ 21176558 (+)
XLOC_017280 esr2a coding downstream 37660 21583639 ~ 21635659 (+)
XLOC_017281 NA coding downstream 184968 21730947 ~ 21736785 (+)
XLOC_017282 nmu coding downstream 499110 22045089 ~ 22062715 (+)
XLOC_017283 clocka coding downstream 521358 22067337 ~ 22176003 (+)
XLOC_017284 BX088688.1 coding downstream 633937 22179916 ~ 22180508 (+)
XLOC_017265 NA non-coding upstream 1198842 20274227 ~ 20279186 (+)
XLOC_017263 BX248118.1 non-coding upstream 1442651 20030968 ~ 20035377 (+)
XLOC_017285 BX088688.2 non-coding downstream 648214 22194193 ~ 22197167 (+)
XLOC_017289 NA non-coding downstream 1480278 23026257 ~ 23031736 (+)
XLOC_017290 CU693368.5 non-coding downstream 1530222 23076201 ~ 23076317 (+)

Expression


Co-expression Network