XLOC_017289


Basic Information

Item Value
gene id XLOC_017289
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23026257 ~ 23031736 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034423
CAGCCAGAGAAGCGCTCGGCTCTGATTGGCTACTCAAGACTACGTTCACGCTCCATAGCTCCGCCCACAGCTTCACGTGTTCGCGCTCGCTGTTTATAGCCAAataaaagagagagggagagaaaacaGACAGCTGAGGTGTTTCTTTCTCCTGATTAACTGACAGTCGTTTCAGCAAAACCTGCACTAACAGTTGCAGAGGATGAAAATGAGTCGTGTTTTACAAGGTTAGCCGACTAGCCTGTATAAATGAGCCTGCTGagatttaaatgagagattttgaATGAGGCTTTGTGCTGTGATTGCAGATATCGGTATGCTGGCGGTGGGCCCTGCGTGATTATGAGCTGCTATGAATATACGATAAGAGGACCGATGACAGGAGGCCTTTGCTGAAATATGAAACTGATGTTTCTGATTCGTCAACGTTCGACAGGTCCTTGCAGGCTACGGGCTGTaaaacactcacatacacacctTTGTTCACCACATCAGAGCCACCTAAATAAGTGTATGTTACTTAAGGCCTTTGGTATGTGTTCAGTAGGCTGTTGAATTAATTTTTGGTTATACATGACAACGTTAGTGGTGTTCTTTGTGAAATGATTGAATTCTTTTGTGTTGTTCTGCTAGAAAGGACCCTTATTTGTTGGCTGGAGCTTACTTTCAAGCTGCTTGAATATTTTGGATTGTCAAAAATGGTGTATGTTGAGCCCTGTTCACTTGCATTATGTGACAAAAATCTCTGTAaccttaataatataacttttttcatttaattaaacatGTTCCACAAGTTTTCATACACTAATGATATAAATATTCGTTCTAGTATGACAGGGTGGGGCTGAATTGaatttgagtttctttaaaccTACATTTAGTGTTTGCATCCTCTCGATTTTCTTCCCTCAAAGTTCAAGCCTGACATGTTACTTTTGCACAGATGTGAGAGGAAGAATCAGTAAACCTCTTAAAAGTTCTTACTCTTGTAGCGCTGTGTACTTACAGGGTCTTGTCTATAATGCTAATGCTATAGCAGCAGTTCTCCACTCCACTGTCAACACTAATAAGCCTGTGTTAACTGTTAGTATGTTGCCTGAAAACAAAAGGCCCAGGTGCTGCACAACAGGAAGCGTCAATGCGCTCGTCAGAGGTGAGGAAAGAGCGTGATGTAAACTTACTTAACATGTTGTTGTGGCCACGTCCAATTCAGTCTTCATGTAATTGTCAGCTAGTTAGTGTAGTGTGAGGTGGGCATGAATGCCTGTGGTGTGGCCGTGTGTGTTTGTTAGGGCGATTATgatatttaattagtattttt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0010467 gene expression biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034423 True 1324 lncRNA 0.41 2 23026257 23031736

Neighbor

gene id symbol gene type direction distance location
XLOC_017288 scfd2 coding upstream 4864 22799641 ~ 23021393 (+)
XLOC_017287 lnx1 coding upstream 285582 22666548 ~ 22740675 (+)
XLOC_017286 kdr coding upstream 748713 22220988 ~ 22277544 (+)
XLOC_017285 BX088688.2 coding upstream 829090 22194193 ~ 22197167 (+)
XLOC_017284 BX088688.1 coding upstream 845749 22179916 ~ 22180508 (+)
XLOC_017290 CU693368.5 coding downstream 44465 23076201 ~ 23076317 (+)
XLOC_017291 usp46 coding downstream 52064 23083800 ~ 23111727 (+)
XLOC_017292 sgcb coding downstream 141974 23173710 ~ 23181762 (+)
XLOC_017293 lrrc66 coding downstream 153794 23185530 ~ 23192298 (+)
XLOC_017294 BX323889.1 coding downstream 200954 23232690 ~ 23232804 (+)
XLOC_017281 NA non-coding upstream 1289472 21730947 ~ 21736785 (+)
XLOC_017279 BX276098.1 non-coding upstream 1480278 21478028 ~ 21545979 (+)
XLOC_017276 BX248104.1 non-coding upstream 1831493 21194649 ~ 21194764 (+)
XLOC_017296 BX323889.2 non-coding downstream 222741 23254477 ~ 23268687 (+)
XLOC_017301 NA non-coding downstream 630270 23662006 ~ 23662547 (+)
XLOC_017304 BX255904.1 non-coding downstream 735217 23766953 ~ 23767069 (+)

Expression


Co-expression Network