XLOC_017291 (usp46)


Basic Information

Item Value
gene id XLOC_017291
gene name usp46
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23083800 ~ 23111727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034425
GGGCGGGGTTTGACCGCTAATCCAGGATGTGAATGTTTCGTTTAGGACGTGCAACTGGCAAAGATGTTTACAATAAGTTTATCCAGCATTTTTATTCTCATTTGCAGTGGCCATGAAGAAAACATCTAGATGAAAGCCGCCGACGTTTATCTCACGCTTTGTTTGCACTTTGCATGAGCGGCGGGAATTGAGTGGTCACTGATTGCTGTCCTCCGTTGGGATTGCAGCTTGGCCTGTCAGTGTTCCGCTGTTACAATCATGTTTATTTCATAAAGATGGCAACGAGAGGCACCTTATAAACTAAATGACTGTCAGAAACATCGCCTCCATTTGTAATATGGGCACCAATGCCTCTGCTCTGGAGAAAGACATCGGTCCAGAGCAGTTCCCTATTAATGAACACTATTTTGGATTGGTCAACTTTGGAAACACATGCTATTGCAACTCGGTGTTGCAGGCTCTGTATTTCTGCCGGCCGTTCAGGGAGAATGTGTTGGCGTATAAAGTCCAGCAGAAGAAGAAGGAGAATCTTCTCACCTGTCTGGCCGACCTCTTCCACAGCATCGCCACGCAGAAGAAGAAGGTGGGCGTGATTCCTCCCAAGAAGTTCATCTCACGGCTGCGCAAGGAAAATGACCTGTTTGATAACTACATGCAGCAAGATGCGCACGAGTTCCTGAATTACCTGTTGAACACGGTGGCTGATATCCTGCAGGAGGAGAGAAAACAGGAGAAGCAGAACGGACGACTGAAGAACAACGGCACTGCCATCGCCACAGACACAGAGCCGGAGCAGAACAAAATCGACCCAACCTGGGTTCATGAGATCTTCCAGGGCACACTGACCAATGAGACGCGCTGTCTCAACTGTGAGACGGTCAGTAGCAAGGATGAAGACTTCTTGGACTTGTCTGTAGATGTTGAGCAGAACACTTCAATAACACACTGTCTCAGGGACTTCAGTAATACAGAGACCCTGTGCAGCGAGTATAAATACTACTGTGAGATGTGCTGTAGCAAACAAGAGGCACAGAAACGTATGCGTGTGAAGAAGTTGCCTATGATCTTGGCTCTTCATCTGAAGCGCTTTAAGTACATGGAGCAGCTTCATCGGTACACTAAACTGAGTTATCGTGTGGTCTTTCCACTGGAGCTACGCCTCTTCAACACCTCCGGGGACGCCGTCAATCTCGACCGCATGTACGACCTCGTCGCTGTGGTGGTCCACTGTGGCAGTGGCCCAAACAGAGGGCATTACATCACCATCGTGAAGAGCCATGGCTTCTGGCTGCTGTTTGATGACGACATTGTGGAGAAAATAGATGCGCAGGCGATAGAGGAATTCTACGGTTTGACCTCTGACATTTCCAAGAACTCTGAGTCGGgatacattttgttttatcagtCCAGAGAATGA

Function

symbol description
usp46 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of GABAergic synaptic transmission. Predicted to act upstream of or within protein phosphopantetheinylation and proteolysis. Orthologous to human USP46 (ubiquitin specific peptidase 46).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0032228 regulation of synaptic transmission, GABAergic biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-213 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of GABAergic synaptic transmission. Predicted to act upstream of or within protein phosphopantetheinylation and proteolysis. Orthologous to human USP46 (ubiquitin specific peptidase 46).

Ensembl:

ensembl_id ENSDARG00000045343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034425 True 1417 mRNA 0.48 9 23083800 23111727

Neighbor

gene id symbol gene type direction distance location
XLOC_017290 CU693368.5 coding upstream 7483 23076201 ~ 23076317 (+)
XLOC_017289 NA coding upstream 52064 23026257 ~ 23031736 (+)
XLOC_017288 scfd2 coding upstream 62407 22799641 ~ 23021393 (+)
XLOC_017287 lnx1 coding upstream 343125 22666548 ~ 22740675 (+)
XLOC_017286 kdr coding upstream 806256 22220988 ~ 22277544 (+)
XLOC_017292 sgcb coding downstream 61983 23173710 ~ 23181762 (+)
XLOC_017293 lrrc66 coding downstream 73803 23185530 ~ 23192298 (+)
XLOC_017294 BX323889.1 coding downstream 120963 23232690 ~ 23232804 (+)
XLOC_017295 ociad2 coding downstream 127106 23238833 ~ 23244193 (+)
XLOC_017296 BX323889.2 coding downstream 142750 23254477 ~ 23268687 (+)
XLOC_017285 BX088688.2 non-coding upstream 886633 22194193 ~ 22197167 (+)
XLOC_017284 BX088688.1 non-coding upstream 903292 22179916 ~ 22180508 (+)
XLOC_017281 NA non-coding upstream 1347015 21730947 ~ 21736785 (+)
XLOC_017301 NA non-coding downstream 550279 23662006 ~ 23662547 (+)
XLOC_017304 BX255904.1 non-coding downstream 655226 23766953 ~ 23767069 (+)
XLOC_017306 NA non-coding downstream 798695 23910422 ~ 23912606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_03041882_03051690 USP46 coding CI01000325 null 3041882 ~ 3051927 (+)
bowfin (Amia calva) AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding CM030130.1 CM030130.1 8264949 ~ 8275630 (-)