XLOC_017298 (si:dkey-90m5.4)


Basic Information

Item Value
gene id XLOC_017298
gene name si:dkey-90m5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23440632 ~ 23444653 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034435
GTTTTAATTAATACTCTTTTTGGAAACGCGGTGTGTACTTTCACCCTGAGTCATGTTCAGATCACTATTTGCATTAGTGACGAGTTTTCTCTGACTGTTTTATTTTCCTGTAAACAGTGCTGGATGCACACACTGGACAGTCTCTGTCAGGTTATATAACCCAAACTAATGAGCAGAATTTTGGAATAACTGGACATTTACACAAggtaaaattgtgtttttattgatgttttaccACTTGTAAAAAAATAACCAGCCAATTTCACTAATCTAGCCATTCTTACGTTTTCTTTATGGTAATAGGCCTAACCATTTGTTGAAATTAGCTTTGCTCTAAGTAAATATCTTCTCAAAAGCAAAACAGCTCTGTCTTATGAAGTAAACAAGTATTTGTGAGAAAATAGTTTGAATTaaacttttttcttcttcaagCTCGTGAAGATGAACTCCTGGCTCGTGCGCGCGCTCGCGGTGATGCTGGTCCTGTGTAGTCGGGACGCCCTCTCGTGTCCAAAGAGATGCACGTGCCACTTCAGCGCCAAAACCACCGAGGTCGTGTGTCCTGATGCTGGACTCTCTCATTTTCCTGGAGACGGTCTTCCTCCCAGCACCACTTCTTTGACCATCCAGTTCACCAACCTGACCGTGCTGACTTCTGAACACTTAAGAGCAGTCCCGCTTCTGGAGGAGTTACACCTGCCCGGCAACAAACTCAGCAGTTTACCGGCAGACATTCTGAAAGACCTGAAGTACCTGCACACCATTGACCTCACAGATAATGAACTGCGAGAGCTACCAGAGTATGTTTTCCGTCATGCTCCACTCCTCAACCTGGTGCTGAAAGACAACCGCATCTCCAACATCCACCCAGATTGGTTTCCCAACAACAGCAATCTCACTTGGTTGGACCTGTCTGGAAATCAACTCATGAAATTCCCAATGGCCCAACTCCAAAATCTGAGACATCTGAAGGTTCTGCACCTCTCGCAGAACAAAATCGAAGAGCTTCCGGTAGGGTGTCTAGATGCTCACACTGCTTTGGAGAGGCTTTATTTGGACCAGAACAAAATCCAGACCTTGGACGTGAAAGCCTTTAGTGGCTCTACTAACCTGACACACATCTTCTTGCAAAAAAACAGAATAGACAGCCTTCCTCCAACTGTATTCCAGGAGCTCAAGCGCTTAGAGTATGTTGATCTCAGTGACAACAGGCTGCAGTTTCTGTCACCTGGCATATTAGATATTAATACCAGCTGGGTAGAGCTGACCTTTAACCCTTGGCACTGTGACGCTAAAATAGAGTACCTATGGAGGAAAATTACCATGGAGTCACTTCAGTCAGAGCCTAAATGTGCTGCACCAGAGAACCTGAAAGATCGTGTCATTGCAACACTTACACGCAAAGACATGGGCCTGAAAGAGTGA
>TCONS_00034436
TTTTCCTGTAAACAGTGCTGGATGCACACACTGGACAGTCTCTGTCAGGTTATATAACCCAAACTAATGAGCAGAATTTTGGAATAACTGGACATTTACACAAgCTCGTGAAGATGAACTCCTGGCTCGTGCGCGCGCTCGCGGTGATGCTGGTCCTGTGTAGTCGGGACGCCCTCTCGTGTCCAAAGAGATGCACGTGCCACTTCAGCGCCAAAACCACCGAGGTCGTGTGTCCTGATGCTGGACTCTCTCATTTTCCTGGAGACGGTCTTCCTCCCAGCACCACTTCTTTGACCATCCAGTTCACCAACCTGACCGTGCTGACTTCTGAACACTTAAGAGCAGTCCCGCTTCTGGAGGAGTTACACCTGCCCGGCAACAAACTCAGCAGTTTACCGGCAGACATTCTGAAAGACCTGAAGTACCTGCACACCATTGACCTCACAGATAATGAACTGCGAGAGCTACCAGAGTATGTTTTCCGTCATGCTCCACTCCTCAACCTGGTGCTGAAAGACAACCGCATCTCCAACATCCACCCAGATTGGTTTCCCAACAACAGCAATCTCACTTGGTTGGACCTGTCTGGAAATCAACTCATGAAATTCCCAATGGCCCAACTCCAAAATCTGAGACATCTGAAGGTTCTGCACCTCTCGCAGAACAAAATCGAAGAGCTTCCGGTAGGGTGTCTAGATGCTCACACTGCTTTGGAGAGGCTTTATTTGGACCAGAACAAAATCCAGACCTTGGACGTGAAAGCCTTTAGTGGCTCTACTAACCTGACACACATCTTCTTGCAAAAAAACAGAATAGACAGCCTTCCTCCAACTGTATTCCAGGAGCTCAAGCGCTTAGAGTATGTTGATCTCAGTGACAACAGGCTGCAGTTTCTGTCACCTGGCATATTAGATATTAATACCAGCTGGGTAGAGCTGACCTTTAACCCTTGGCACTGTGACGCTAAAATAGAGTACCTATGGAGGAAAATTACCATGGAGTCACTTCAGTCAGAGCCTAAATGTGCTGCACCAGAGAACCTGAAAGATCGTGTCATTGCAACACTTACACGCAAAGACATGGGCCTGAAAGAGTGAGAGAAACAAGATCTGGAAGAgaaaatgtgttcaaaagaagtgGAAGCAAGGGTTTAAGCAATTTCCATTAATGGTTTGCAAGCTGCACTGGAAATAAACATTTAAGATTTAATAGAACAGTA

Function

symbol description
si:dkey-90m5.4 Orthologous to human LRG1 (leucine rich alpha-2-glycoprotein 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-250 Orthologous to human LRG1 (leucine rich alpha-2-glycoprotein 1).

Ensembl:

ensembl_id ENSDARG00000029388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034435 False 1425 mRNA 0.44 2 23440632 23444531
TCONS_00034436 True 1219 mRNA 0.47 3 23440734 23444653

Neighbor

gene id symbol gene type direction distance location
XLOC_017297 fryl coding upstream 18287 23315242 ~ 23422345 (+)
XLOC_017296 BX323889.2 coding upstream 171945 23254477 ~ 23268687 (+)
XLOC_017295 ociad2 coding upstream 196439 23238833 ~ 23244193 (+)
XLOC_017294 BX323889.1 coding upstream 207828 23232690 ~ 23232804 (+)
XLOC_017293 lrrc66 coding upstream 248334 23185530 ~ 23192298 (+)
XLOC_017299 palld coding downstream 53602 23498255 ~ 23649028 (+)
XLOC_017300 si:ch211-191d2.2 coding downstream 213207 23657860 ~ 23667713 (+)
XLOC_017301 NA coding downstream 217353 23662006 ~ 23662547 (+)
XLOC_017302 nek1 coding downstream 225841 23670494 ~ 23714017 (+)
XLOC_017303 sh3rf1 coding downstream 297921 23742574 ~ 23836967 (+)
XLOC_017290 CU693368.5 non-coding upstream 364315 23076201 ~ 23076317 (+)
XLOC_017289 NA non-coding upstream 408896 23026257 ~ 23031736 (+)
XLOC_017285 BX088688.2 non-coding upstream 1243465 22194193 ~ 22197167 (+)
XLOC_017304 BX255904.1 non-coding downstream 322300 23766953 ~ 23767069 (+)
XLOC_017306 NA non-coding downstream 465769 23910422 ~ 23912606 (+)
XLOC_017309 BX119992.1 non-coding downstream 687420 24132073 ~ 24138562 (+)
XLOC_017310 BX901952.1 non-coding downstream 921294 24365947 ~ 24373933 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G468953 NA non-coding NC_048570.1 CM023224.2 6821895 ~ 6822150 (+)