XLOC_017300 (si:ch211-191d2.2)


Basic Information

Item Value
gene id XLOC_017300
gene name si:ch211-191d2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23657860 ~ 23667713 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034443
ACTGGACCGCCAGACCACTGAAGGAATAAACACTGGAGCCCTCGATGGAAACGATGATGATGAGTATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCCTTAGTCAAATCTGTCAGTTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAGCTaagagaaagaggagagaaaCTCCAGCCAGAGCATCAGGATTCGATGTGCGGCGTCAGAGCTCAGAGATTCAGAGACACACAGAACTCAGATCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAAACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCATCAGACTGGAGGACTGCAGGAACCTGATACAGAGAACTGAAAACatcacagaagaagaagaagaccaGAGAGACCAGGAGGAGGATGATGGTGATAATGATGAAAATggaaaagatgatgatgatgataatgatgatgaggacaataatgatgatgaattTATTCCTGCAGATGACAACATTGGATCGTCTGATGAAGAAGCGCCTTTAACTTCAAAAGATAAGCGGAAGTCCAAGAAAAGTTTCTCTTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGGTTTTTATTGTTTCACGAAAAAAAACACTCAGATCCGAAGGCCTCTGTCTGCTGGAGATGTCTTAAGATTTTTCCTACATTACAGGAGAGAAAACTTCACCAGAAAGAGCATCTGGCAAAGAAGGAGTTTCACTGTGAACAGTGCGGGAAGGACTTTTTATCTTTTAGTCAGCTAAAAGGTCACTTGAAGACACACAGTGGTGAACAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCTGCAATAAACAGACCCTGGAGGTTCATAAGAGAATCCACACAGGCGAGCGGCCGTATAAATGCCCTCACTGCAACAAGAGTTTTAATTACAAAGCCGCCATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTTCCAGTGCAGCGAGTGCGGAAAAGCCTTCAAAACCAACTACACTCTAAGCTGCCATCTAAAATTCCACTCTGAGGAAAAACCGCTTCAGTGCAAATACTGCAACAAGCGATTCCGGCAGAAAGCACAACTGAATGtccatgagaggattcacaccggagagaaaccgtacctGTGCGCCGAATGCGGGAAGAGAGTTAAATCTTCTACTGAGATGGTTTATCACCAGAGAcaccacactggagaaaaaccgtacCTGTGCAAAATCTGTGGGCGGAGTTTCAATAAAACAAGCATCTTAAAAAACCAcatgaggactcacactggagataGACCCtataagtgttcacactgcgacaagacgTTTGCGCGACTTGATGTGATGAAGACCCACGAGAGGGTtcatactggagagaaaccgtaccgCTGCTCCATCTGCGGAGAGAGGTTTGCGTATTTAGGAAGTTTTCTGAGCCACCAGAAGAAACATGGAGGAGAATGAGTGGATGAGCAGATCAGCGTATGATGGAGAATTGAGCACTGAGTGTTTCTGGCTGCATTTCTCAACCCTAGTCCTCACTCTCCACCGCTCTGCCTATTTTGATCCTTTGAAAAAAAGACAGCATTTACTGCTA
>TCONS_00034444
ATGATGAGTATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCCTTAGTCAAATCTGTCAGTTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAGCTaagagaaagaggagagaaaCTCCAGCCAGAGCATCAGGATTCGATGTGCGGCGTCAGAGCTCAGAGATTCAGAGACACACAGAACTCAGATCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAAACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCATCAGACTGGAGGACTGCAGGAACCTGATACAGAGAACTGAAAACatcacagaagaagaagaagaccaGAGAGACCAGGAGGAGGATGATGGTGATAATGATGAAAATggaaaagatgatgatgatgataatgatgatgaggacaataatgatgatgaattTATTCCTGCAGATGACAACATTGGATCGTCTGATGAAGAAGCGCCTTTAACTTCAAAAGATAAGCGGAAGTCCAAGAAAAGTTTCTCTTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGGTTTTTATTGTTTCACGAAAAAAAACACTCAGATCCGAAGGCCTCTGTCTGCTGGAGATGTCTTAAGATTTTTCCTACATTACAGGAGAGAAAACTTCACCAGAAAGAGCATCTGGCAAAGAAGGAGTTTCACTGTGAACAGTGCGGGAAGGACTTTTTATCTTTTAGTCAGCTAAAAGGTCACTTGAAGACACACAGTGGTGAACAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCTGCAATAAACAGACCCTGGAGGTTCATAAGAGAATCCACACAGGCGAGCGGCCGTATAAATGCCCTCACTGCAACAAGAGTTTTAATTACAAAGCCGCCATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTTCCAGTGCAGCGAGTGCGGAAAAGCCTTCAAAACCAACTACACTCTAAGCTGCCATCTAAAATTCCACTCTGAGGAAAAACCGCTTCAGTGCAAATACTGCAACAAGCGATTCCGGCAGAAAGCACAACTGAATGtccatgagaggattcacaccggagagaaaccgtacctGTGCGCCGAATGCGGGAAGAGAGTTAAATCTTCTACTGAGATGGTTTATCACCAGAGAcaccacactggagaaaaaccgtacCTGTGCAAAATCTGTGGGCGGAGTTTCAATAAAACAAGCATCTTAAAAAACCAcatgaggactcacactggagataGACCCtataagtgttcacactgcgacaagacgTTTGCGCGACTTGATGTGATGAAGACCCACGAGAGGGTtcatactggagagaaaccgtaccgCTGCTCCATCTGCGGAGAGAGGTTTGCGTATTTAGGAAGTTTTCTGAGCCACCAGAAGAAACATGGAGGAGAATGAGTGGATGAGCAGATCAGCGTATGATGGAGAATTGAGCACTGAGTGTTTCTGGCTGCATTTCTCAACCCTAGTCCTCACTCTCCACCGCTCTGCCTATTTTGATCCTTTGAAAAAAAGACAGCATTTACTGCTATAGTACGGGTAAAAGCAGGCCTTAAATTGTGCCGGTACACTCCGgatccagcacctctgaaatttgatctggcacctcattttaaCGATCCTCCTTCTCAACCGCCCTACTCCCCTGTTCACTGTTACTATAGTCCCGACTCCCCAAccatcttcactttcatccgcgacaaCCCTCCGCTTTTCACTTCCGTTCTTCGTCCATGACACCTCTCCGCCAACGCCCCCCCTGCTCTCCACTTTCGTGCTCGacactttttcagtttagttcacctttatttgtatagcgcttttactatgtagattgtgtcaaagcagcttcacatagaagatcatagtaaattaaaaccgtgtcagtccagttttcagtgttaagGGGGCTGTCACACTAGCACTTTAGGTCCGCACCCAGGTTCgtttgactgtctgtctgtctgtctcagtCACTTTCGTACTTTAGTGACAAGCGGGGCTGAGCCacggcaaacacagtgatacacagtgCTGTCTGATtttctcctccaaaaacagcttctggaCTGTGTggtgttctgaatgtttataatatttttgtggcagatgtaaaacatatgctggataagtaaaacaaatgctggataagttgtcggttcatttcgctgtggccatcccttatgaataaagggactaaactgaagaaaaatCAATGAATGTTTATTACAGTGGTGGTTCAATCTGTTTGACATGGTCATTTGAGCAGCCAGTAAATACACATCTATTCATCCACTATCAaagtattgtaaagtgtgatatTTTGCCAtggtaaagtaaataaaataaaagtgttgcCTCGttcaaataaagattttaaaatgaaaactaagcGTCATTAGTCAAACAATTATATGTTCAATGATTATGAGCCTCCTGTGTGTGATTTGCATAAACAGCGGttatatatattaacagccttttcatttaatttattttctcttaaatttgCAAGTTATGATAAGGGCTACTTTCAGCCttaaaaagatatattgtgcATATAAGATGGTGAATTTGAGAATGTCCTTTAGTGACTACGTAAGCTGAGGTTTGGTGCATGTGTCGCTGTTTAAGTGGAGATTTTCAGCTCTGGAGAAAAATAACTGACTCAGAAAACGGCGGGTAAACTTTCAAATTTTGTATCAACATTCATCCAAGTGGACCTGTTCAGCTCTTACTTGGTAAtttcaaatatcaaatattttacATACTAATCAGTTAAGTATAAAAGGTATGAAAATTATAGACAATAAATTTAATTACTTGCAATAAAAAGTTATGCAGAACCACATTTTTgcctaaatgcaaattttttttaaattctttttttaaacagattgaGTGGAAAAAAGAATGGAACTTACCTAGTAAATACTGTCTcaccattaaaattaaataagtaacaaactaatacatttaatttatccaGTGAAaagttgttacatttttttttagagaCATAGAATCTATGTGCACTTTTTGTAAATTAGAGGAGGAATCAATAAaacaccagttttttttttatgcacatatacCCAAATGTTTTGGTTTAATGTTGAATATCTTGTATTTAaacttacaaaaataaaaattcagttttcttgtaaagattttttttttgatatgaaataataataacaaaacgtTTTAGCAAActtagttttttaatttaatgataatatatGGGAAGTATTAGGAAGCTTAATATTTATTTGGTTAAAATTGATCTTAAGCATTATATCAAACCCTAAaagacacaaaaaataaaaaagctataaGGATGTATGCAGTTTTGAAATCATTTTCTTAgcaatttttttgtcatttatatatcccctttaattttatttatttatttttctactgATTTATTCTTTAGATGTAAAAAAGTGTAAGCATTGTATTCTTCATTTTTTGTATGCTGT

Function

symbol description
si:ch211-191d2.2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110407-3 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000090836

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034443 False 1677 mRNA 0.46 4 23657860 23665759
TCONS_00034444 True 3575 mRNA 0.39 3 23658791 23667713

Neighbor

gene id symbol gene type direction distance location
XLOC_017299 palld coding upstream 8832 23498255 ~ 23649028 (+)
XLOC_017298 si:dkey-90m5.4 coding upstream 213207 23440632 ~ 23444653 (+)
XLOC_017297 fryl coding upstream 235515 23315242 ~ 23422345 (+)
XLOC_017296 BX323889.2 coding upstream 389173 23254477 ~ 23268687 (+)
XLOC_017295 ociad2 coding upstream 413667 23238833 ~ 23244193 (+)
XLOC_017302 nek1 coding downstream 2781 23670494 ~ 23714017 (+)
XLOC_017303 sh3rf1 coding downstream 74861 23742574 ~ 23836967 (+)
XLOC_017304 BX255904.1 coding downstream 99240 23766953 ~ 23767069 (+)
XLOC_017305 ginm1 coding downstream 187312 23855025 ~ 23860808 (+)
XLOC_017306 NA coding downstream 242709 23910422 ~ 23912606 (+)
XLOC_017294 BX323889.1 non-coding upstream 425056 23232690 ~ 23232804 (+)
XLOC_017290 CU693368.5 non-coding upstream 581543 23076201 ~ 23076317 (+)
XLOC_017289 NA non-coding upstream 626124 23026257 ~ 23031736 (+)
XLOC_017285 BX088688.2 non-coding upstream 1460693 22194193 ~ 22197167 (+)
XLOC_017309 BX119992.1 non-coding downstream 464360 24132073 ~ 24138562 (+)
XLOC_017310 BX901952.1 non-coding downstream 698234 24365947 ~ 24373933 (+)
XLOC_017311 NA non-coding downstream 721909 24389622 ~ 24704953 (+)

Expression


Co-expression Network