XLOC_017303 (sh3rf1)


Basic Information

Item Value
gene id XLOC_017303
gene name sh3rf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23742574 ~ 23836967 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034448
CGCTGCGGTGTCCCACAGAATCAACGCGGCTCGTCATGGCGCTCGGACGCAAGAACTCGCTTCTCCTGTTTTTCTCTGCTTTCTTCTGAATTGACTCCATCTGACTCTCTTGGACTGGGATCTTTTGCCCTTTCGACTGAACGGCTCAAGAGCGACGATCTAATCTTCGCTGTGATAAAAGGATCTGAATATGTAAACTTGAGTAGAACTGGGCGAGCAAGATTTCAGGATCCCTTTTCCAGGGCGAATTCCCTAGTTTGAGGAACTCGGGAAAGAAACTGTTctggaagaagaggaggagtgAGAAGGGGCCCTTTTTTAAGTGAATGCTAGAGACTTGATCATGACTACGGCATGGGAGTGACGTGACGTCAGGATTGGACTTTCCCTCCTAACAATCTCATATGCACACACCCACACCATGTGCTTCTCTCTCCGGCGAGACAAAACTGACTGAATGAACGAGTACGCTGAGAAAGATTGTGCGAGTGTGAAAATGGACGAGTCTGCGCTCCTGGACCTGTTGGAGTGTCCGGTCTGCTTGGAGCGTCTAGATGCCACGGCGAAGGTGTTGCCATGCCAGCATACGTTTTGCAGACGCTGCCTGCTTGGAATTGTGGGATCTCGTGGAGAACTGCGCTGCCCCGAGTGCCGCACGCTAGTGGAGAGCGGCGTGGATGAGTTGCCTAGCAATATCCTCCTTGTACGGCTACTAGATGGCATCAAGCAGAGGCCGAGGAGGACTGGAAGTGTGCATGGCACATGTGCTAATGGATCGGCAGTGGCGGGGGTCCGAGCGCAGGGTGCCGGGGGAAGCCAAAGGGATCCTGGTCCCACAGGGGGACAATCTCAGCGTGTCCAAGCAAAGAGCACTCCAGTTAGGGGAGTTCCTCAGTTACCCTGCGCTAAGGCTCTATACAACTACGATGGCAAAGAACCTGGAGATCTCAAGTTCAGCAAAGGTGACATCATCATACTGCGACGACAGGTTGATGAAAACTGGTACCACGGAGAGATGGGAGGAGTCCATGGCTTTTTCCCAACCAATTTTGTCCAGGTCATCAAACCTCTCCCACAGCCGCCCCCTCAATGCAAAGCCCTGTACGACTTTGAGCTCAAAGATAAGGAGGCTGACAAGGACTGCCTGCCTTTTTCAAAGGATGATATTCTTACTGTGATTCGTCGTGTGGATGAGAACTGGGCGGAAGGCATGCTGGGAGATAAGATTGGCATCTTCCCCATATCTTATGTAGAGTTTAACAGTGCGGCTCGACAGCTCATAGAACTGGACAAACCATCTGAAGGAGGAGGAGACTCTAGTGAAGGACCGTCCTCGTCCTCCTCGGGCCCTCAAGCCAATGGCTCCCAGAAAGCCCCTGGGGAAAAGAAGAACAGTAAGAAGCGGCACTCCTTCACCTCATTGACTATGTCCCATAAGCCTTGCCTGGCTCCTCCACCACAGAGACACTCCATGGAGATCAGCGGCCCGGTTCTGATCAGCTCCTCTAACCCCACAGCAGCGGCCCGGATCGGAGAGCTCAGCGGAGGCCTTTCCTCCAGCGCACCTTCACAGGttcacatttgcacaacaggaCTCATTGTGACTCCTCCACCAAGCAGTCCTGTCACCACAGCGACAGTTTTCACATTTCCTCCAGAAACCAGCTATGCCTCTATTCCAGTGGATGCtcttcctcctccacctcctcctccacctcagtCTCAGTCCTCAGTTGTTGGCGCTGCCGCCTTGAATGCTGGCCAAAGGCCATCACCCGCTGCGGGCGACCAGAGTGGCCGTCAGAGACCCACAGTGTATGTGGCGATGTTTCCGTACTCTCCCCGTAAGGAGGATGAGTTGGAGCTGAGGAAGGGTGAGATGTTTCTGGTGCTGGAGCGCTGTCAGGACGGCTGGTTTAAAGGAACATCCATGCACACTGGCAAGATCGGAGTGTTTCCTGGTAACTACATGAGTCCTGTCAGCAGGACTGTTTCTGGCAGCAGTCAGCCTAAAGTCCCCCTGACCCTTTGCTCTCAGGCTGGACGTGGCGTCACCATTGTCAGCCCTTCATCTGCTTTGGGGAGTATGGACCTCAGCAAACCTCTGCCAGTCTGCCCAAACGCTACCCCATCCTGCTCACTGCCTGCTGCTGTGGTGACAGCTGCACATCTACCCACCGGTCAGCACCCCAAAGTGCTCATGCATGTGACGTCACAGATGACTGTTAACCAGGCACGCAATGCAGTCAGAACAGCTGTAAGTCACAGTCAGGACCGGCCTACAGCAGCAGTGACACCCATTCAATCCCACAATCCTGTAGCTTACCTTCCCAGCACAGCTGTGGTTCTCCAGGCGTCACCTGTCCTGAACTCCAGTTCGGGATGCTCCTCCGCTAGGGTCGGGGTGGCTTTGGGTTGCGCTGCCGCATCCTTGACCCCTCCTAATGTTAGCGCTGCTTCTTTAGACACTGATGCCATGAGACCTGTTCCTATGGTGGCATTACCTGTGAACGCTGGCAGCACTAAACCTCTCGGGGCAGCATCCAATCACGGTGTGGCCTGTAGGCTGGATAAAGATTGCAAGAGAGAGAAGAAAGGCCTGCTGAAACTGCTGTCCAATAAAAAGAAGCTCCGCCCATCTCCTCCATCCTCCCCCACACTGGAGGCAGAGCAATCTGTTAGCATGGAGCTTCCCCAAGGAGCAGTGGGTCCAGAAATGGCTCTGTCTGGGTCAGCAGGGCACAACGGACGCATTGGTGCCTGTCCTATGGATTCGGAGCTATCGATGTCCTCCTCTTCATCAAACACAGATGCGGTGACACACAGGAGCAGCCCACAGGACAACACTGCCCCCATTGCTCCGCCTCCTCGACAGCCGTGCTCCTCCCTGCTCTCCATGCAGCATGATGGACGGCCAATCGTGTGTGAGAGGTATCGTGTGGTGGTGTCCTATCCTCCCCAAAGTGAAGCAGAGCTGGAACTCAAAGAGGGAGACATTGTATTTGTGCACAAAAAACGAGAGGACGGCTGGTTTAAAGGAACACTACAGAGAAACGGCAGAACCGGGCTGTTTCCTGGCAGCTTTGTTGACAGTATCTAACGTACACACAGCAACTAATATTTAGATATCAAATTCTCCATCACTGAAAACCCCACACTGAACTTAAGCCTTCATTCGCTGAGCAGTGGTCTGAAACTCAACTGCTGGAGTTTTGCTTCATCAGCTGCATGGATTTAACCACAGTCTTATGAAAATCTCAGACCAGTCCTAGTCCTTTAGCATTAGATCAAAACCCCCTTTCCCCAAACACTTCAAAGCGGCAGAGTTTTCGTAGTAGGTGCCCTATTTCTAGCTCAGTAGATGAAGTTGTGATAGGATCCGTTAATTTATGCATCTGTAACATTTCAAAGACATTTAATGTGTGCCTTGTACTGTCTCACTTTACTGTATATAAGCAAAGCAAAGCTGATCTGAGTCATGACGAGAACAATATGAATTTCTTTCCACCTGAAAAACATTTAACTTATTTTTGCTTTGTAGTTTTTGAGGGAAGGTTTGTTATGTGAGCCGACTGGTCGAATGCCTGTAGAGTCTGAGTTATGTCACTGATGGACATTTGCTTGAAATAAATCAACAATCAATACCAGATGAACAGCAGAATGAATTCAGAAAGGTTGCTTCACTTTAGCTTTCATATTGAAGTCATTTGATGAGGAGTGAAGACACCACAGGCCTCCcattctgattggttgttgtgtgtttgtaaaGGCTATTATAGCTACGCTGACTGATGGAATGAAGGATGACTGATTGTTAGTTTTTAAAGATTACACTCAGACTTTGAATCCAATATTACTAATTGTCATTACGATCGGGAACAGTCACCCTTAGTAAAAGTGCAGGATCCTACAATGATGATGCCAATGTGCGCATGTGTTTGTTCCCTCTCTGGTATTTATAACTGCTTTCGTTTCAGAATGATACATTGGTCTATGCGTGAGCTcccaaaatatttttgattgatgATTAAAAAATAGCCTTTATGTAACATTACAACCTGGCTGATTTCATATGATTGACtaaaaatggtctttaaaagtgTTGTTTAACTCCAAATCCACAAAACGTTGCTTCTCTTAAAGTCGGGTCTGTTGTCTGCTGTATTTTATGTGACATTTCATGTTTTGTATACTTGAAAGTGATGGTGTTTGTGTATTTCTATGCTTCATACAGTAgatcaaatgtttttattaatattattattatgttgaaagcacaaaatcttttttttttaaatagagtatTGTTAGATATAATTATTGCCCCATTAAAACGCTGGTTCATTTGGGAGATCTTTAATTGTTGTCTTGATGATGCCTTTACAACTAGTAAGATGGCCTTCGGTTTGTGTATTACTATTGTATTAGTTTATCCAACCACTGAGTTGAACAATTGTTCTCTGTTTTAGATTACTGGTTTTGGCTCTATTCATGGAGCTCCCGACATGAGCCGACTCTAGATTAAACTTTCCACATGAGGAGCATTTCACTGCTTGAATCAAGCATGTTTAAAGTTGACACTTGTTCACTTGTCAAGATCTTAAAGTCAGTAAATGGGATATTAGTCAGAAGAAAATTGAACATTTGATTTCAGCTCATTCAAGTGTGTGTTAGATGTGAGGGgtataaaataaagtcatttttatAAAACCTG

Function

symbol description
sh3rf1 Predicted to enable MAP-kinase scaffold activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of JNK cascade; protein autoubiquitination; and regulation of alpha-beta T cell activation. Predicted to be located in lamellipodium. Orthologous to several human genes including SH3RF1 (SH3 domain containing ring finger 1).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001764 neuron migration biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0043370 regulation of CD4-positive, alpha-beta T cell differentiation biological_process
GO:2000564 regulation of CD8-positive, alpha-beta T cell proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042995 cell projection cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005078 MAP-kinase scaffold activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6288 Predicted to enable MAP-kinase scaffold activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of JNK cascade; protein autoubiquitination; and regulation of alpha-beta T cell activation. Predicted to be located in lamellipodium. Orthologous to several human genes including SH3RF1 (SH3 domain containing ring finger 1).

Ensembl:

ensembl_id ENSDARG00000070470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034448 True 4714 mRNA 0.48 12 23742574 23836967

Neighbor

gene id symbol gene type direction distance location
XLOC_017302 nek1 coding upstream 28557 23670494 ~ 23714017 (+)
XLOC_017300 si:ch211-191d2.2 coding upstream 74861 23657860 ~ 23667713 (+)
XLOC_017301 NA coding upstream 80027 23662006 ~ 23662547 (+)
XLOC_017299 palld coding upstream 93546 23498255 ~ 23649028 (+)
XLOC_017298 si:dkey-90m5.4 coding upstream 297921 23440632 ~ 23444653 (+)
XLOC_017305 ginm1 coding downstream 18058 23855025 ~ 23860808 (+)
XLOC_017306 NA coding downstream 73455 23910422 ~ 23912606 (+)
XLOC_017307 casp8ap2 coding downstream 110037 23947004 ~ 23956014 (+)
XLOC_017308 cx52.6 coding downstream 123558 23960525 ~ 23964383 (+)
XLOC_017309 BX119992.1 coding downstream 295106 24132073 ~ 24138562 (+)
XLOC_017296 BX323889.2 non-coding upstream 473887 23254477 ~ 23268687 (+)
XLOC_017294 BX323889.1 non-coding upstream 509770 23232690 ~ 23232804 (+)
XLOC_017290 CU693368.5 non-coding upstream 666257 23076201 ~ 23076317 (+)
XLOC_017289 NA non-coding upstream 710838 23026257 ~ 23031736 (+)
XLOC_017310 BX901952.1 non-coding downstream 528980 24365947 ~ 24373933 (+)
XLOC_017311 NA non-coding downstream 552655 24389622 ~ 24704953 (+)
XLOC_017313 NA non-coding downstream 917479 24754446 ~ 24754820 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_03508153_03535245 SH3RF1 coding CI01000325 null 3508153 ~ 3535245 (+)
bowfin (Amia calva) AMCG00017547 sh3rf1 coding CM030131.1 CM030131.1 9164861 ~ 9184746 (-)