XLOC_017305 (ginm1)


Basic Information

Item Value
gene id XLOC_017305
gene name ginm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23855025 ~ 23860808 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034450
TGCGCGTATTTTGATTCCCGTCTTGTTGTTAACTAGGCTGATAAAAAATGGCGTCTAGGTGCAAAATACATTTAACAGTGGCTTATTTGCTCATCCTGTGTATTCTAGCCAGTGCTCAATCAAAACAAATGACAACGGAAACCGTCGTGTTAAACGTTACAGCGCTCAGTGAAATTAACCAGACTAAGTACAACGTACAGATTAATTTGAATATTGGTCTTCTGGACAATGACATATTTATTAACGGAGCTCCTCTCAAGCCTTCAGGAGTCACGAGGATGACATGTCCTGCTCTGCTGTTGGATGGTTATAATGTGAGCTCTGGTAATTCAGTGGATGGCTTGGTTAGCTGTGAGCTGCGGCTGATGGTGAATCAGTCATATGTTCAGAGTGATGCTGCAGAACAGCTTCTGTTCCTCGTCCTGAGCCAGGAAATAATACAGCTGGCAGATGAGAAGGTCCAGCAGCCAGAAATATCAGAGGTAGAGATCATGTGGAATCAGAGCTCAGAACAGATGACACAGGTCACCAGCATTTACCCTTCAGCAAGAAGCAAACTCTCCATTATTCCAAGAGAGAATGACGTATTGGTGACCGATGCATCTGTACAGAGTGCAGTTGAAGACCAAGTGCGAAACACCACCAGCCATTATCTGCTCAAAAACTCAGAAACCACCCAGGAGGAGATCGCAGCTCCAGGGAAACTTCCTGAAACCCCCCTGCGGATGGACCCGGAAACGCTGTATGAGTCCAGAGAGGAAGAGGAAAGGCGTTCAGATTCCTTGCTGCTTGAGCCTCCTTTAAGTGGGTCCATGTCCTCATACAGTGTGGCGTGTCAGTGGGTGGAAAAGTTGAGGGATAAACTGAGGCGCTTCTTGTCAGACTCGGTGCCGCTCTTCTTCTTGGTCATGTGGGTGGTAGTGGTTGGTGTTGCAGGCTCTGCTGTCGTCATTAAGATCCTGGATCTGATTTTCCCTTCCTGTGAACACAGGGGATTCTTTCATCTGAACCCAGAGACCCTGATGCCAGATGATGAAAAAGTGAGCCTAATAGACAACATGGAGGGGGACATGACAGAAAAGAGCATTTTGCTGATTGAGAAGTGATGGATGTGTCTTCAGTTTGGTTATGTGGCTTTATTTGGTCGAAACACCAATGAGTTCAGTGTAGcaatttaaaagaaacaaaaagaaaactccTAAGGCAACAGATTTCTATTTTCACATCTGAATTAGCAGATTACTTTTGTATTCATCACTACACTGTGCTTTGGGGATTGTGCATTGAGAGGTGGAATGGTGAAAATGCTGAAATGTAAAGCACAATACCTAAAATAGCCCTGCCTTTCTCACTAAACTGCTTGAATTATGGAACTACTCTTGCCTGAGGAGTAAAGGGTCATCGCTGACAAATAAATGGTGTGGCATCAATGGGAAAATGGAAAGAACTAtcaaaaaaacttttaactgACCAGTTTGAGTGGTCCAGTTGATTTAAATGgatttttttcttataatttcTCACTCTGGGTCAATTTTTATATGTCCTTTGTGAAACTGCCTCTGTTGCTTAATGTGGTTTTATGTGCTATTCATGTTGCATCAGATATTGCTGTTACATGAAGCATGCGTACCAGGAATTCATTGCAGCTTTCACTTGTATTAGATGAATAAAATGACCTACTGTATAcgctttaaaaaaatcattattgtaCCTCAACATTTGAAACATTTCAGTTGGACGCTTACATTTCATTGTAGCCCATCTTTAGAGGTTAATGAGTTATGTTTGTGTAATTCTGAAGCATTGTTTTTCTCTGGTTTGTTACACGAGTAAATTCTGCACAAACATG
>TCONS_00034451
AACTAGGCTGATAAAAAATGGCGTCTAGGTGCAAAATACATTTAACAGTGGCTTATTTGCTCATCCTGTGTATTCTAGCCAGTGCTCAATCAAAACAAATGACAACGGAAACCGTCGTGTTAAACGTTACAGCGCTCAGTGAAATTAACCAGACTAAGTACAACGTACAGATTAATTTGAATATTGGTCTTCTGGACAATGACATATTTATTAACGGAGCTCCTCTCAAGCCTTCAGGAGTCACGAGGATGACATGTCCTGCTCTGCTGTGTAGGACTATTAGTTTTACTGTCTTTCTTAAATATTAATCAATTGTATTCATGTATTTAAAGTGCAGTCAAGAGAAAGAGCGACCAATCATatgactgtttttttcttttcttgttaaCACTTAGTAATGTCCCATCTGTGTATGTTACTTATGGTATACTGAAAAGCATcttaaaatatctaaaacttcTAAACtcttaattaatgtttatttctacATGTATTGTGAATTAATAAAATGTTGGTCAATG

Function

symbol description
ginm1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GINM1 (glycoprotein integral membrane 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5900 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GINM1 (glycoprotein integral membrane 1).

Ensembl:

ensembl_id ENSDARG00000021975

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034450 False 1852 mRNA 0.42 8 23855025 23860808
TCONS_00034451 True 521 lncRNA 0.34 3 23855055 23855897

Neighbor

gene id symbol gene type direction distance location
XLOC_017303 sh3rf1 coding upstream 18058 23742574 ~ 23836967 (+)
XLOC_017304 BX255904.1 coding upstream 87956 23766953 ~ 23767069 (+)
XLOC_017302 nek1 coding upstream 141008 23670494 ~ 23714017 (+)
XLOC_017300 si:ch211-191d2.2 coding upstream 187312 23657860 ~ 23667713 (+)
XLOC_017301 NA coding upstream 192478 23662006 ~ 23662547 (+)
XLOC_017306 NA coding downstream 49614 23910422 ~ 23912606 (+)
XLOC_017307 casp8ap2 coding downstream 86196 23947004 ~ 23956014 (+)
XLOC_017308 cx52.6 coding downstream 99717 23960525 ~ 23964383 (+)
XLOC_017309 BX119992.1 coding downstream 271265 24132073 ~ 24138562 (+)
XLOC_017310 BX901952.1 coding downstream 505139 24365947 ~ 24373933 (+)
XLOC_017296 BX323889.2 non-coding upstream 586338 23254477 ~ 23268687 (+)
XLOC_017294 BX323889.1 non-coding upstream 622221 23232690 ~ 23232804 (+)
XLOC_017290 CU693368.5 non-coding upstream 778708 23076201 ~ 23076317 (+)
XLOC_017311 NA non-coding downstream 528814 24389622 ~ 24704953 (+)
XLOC_017313 NA non-coding downstream 893638 24754446 ~ 24754820 (+)

Expression


Co-expression Network