XLOC_017308 (cx52.6)


Basic Information

Item Value
gene id XLOC_017308
gene name cx52.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23960525 ~ 23964383 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034453
TGTCAACAGAGGAGTACTAATTTCTCCCATGAGTGTGAAAGACAACTGATGTTGTGGGATTTTGCTTTTAGTATGATGGACTGATGCTACAGTTTTTCCGTGAATTCCACAAAAAGTTTTAGGCCATGTGAAAATGGGAGATTGGAACTTGCTTGGGAGTATCTTAGAGGAGGTTCACATTCACTCCACCATTGTGGGCAAAATCTGGCTTACCATTCTTTTCATTTTCCGCATGCTCGTACTTGGGGTTGCTGCGGAAGACGTATGGGATGATGAGCAAAGTGAGTTTGTGTGCAACACAGAACAGCCTGGATGCAAGAATGTCTGTTATGACCAAGCGTTCCCGATATCCCTCATCCGATACTGGGTCTTGCAGATCATCTTTGTCTCTTCGCCATCTTTGGTGTACATGGGACACGCACTCTACCGGCTCCGAGCTCTGGAGAAAGAGCGGCACAAGAAGAAAGTCCAGCTGAAGGTGGAGCTGGAAGAGAGTGAGGCTTTGGAAGAACACAAAAGAATTGAAAAAGAGCTTCGGAAGCTGGAGGAGCAGAAGAAAGTGAGGAAGGCCCCTCTGAGGGGTTCCTTGCTGCGCACATATGTGTTCCATATCTTAACCAGGTCAGTGGTGGAGGTGGGATTCATAGTGGGGCAGTACATGCTCTACGGTATCGGACTGACGCCGCTGTACAAGTGTGAGCGTGATCCTTGCCCCAACAGTGTAGACTGCTTTGTTTCTCGGCCGACAGAGAAGAACATCTTCATGATTTTCATGCTGGTCATATCAGGAGTGTCCTTGTTCCTCAATCTCCTGGAGATTTTCCACCTTGGTGTGAAAAAGATCAAGCAGACCATATATGGATCCATGTACAGCGACGACGACAGCATTTGCAGGTCAAAGAAAAACTCCATGGTCCAACAAGTGTGCTTCCTTACAAATTCCTCACCACAAAAACAGTTGCATTTGACACACACTTCCCTTGCCATGGCACCTGATGGACAGATGGTACCTTTGCCTATCTATATGCAGACAGCTGGTCATGTAGTGTCCAACATTAACCCAAATGGATCTGTGCAGCCTCTGAGACAGGACCGTCTTCCAAGCCAACCCGAAATTCAAGTTCTTCAACAACTGGGAATCAAAGAACGAAGGTCCATTCCAGACAACCGTCTGCAATCCTGCAGCAGTGAGGATTCTGGCCCCAAAGGTTCCGAACCACCGAAATATTCTCAGCAGCCCCGAGCTTCATTCAGAGCCAGTCATATAGAAATACCAGCAGCATTAAGGAAACACAGCCGTGTTAGTCAGTGTAAAGACTTCAGTGAGGAGAGTGATTCGGTGGAAAGTGGGAACTATCCTACTGCCAGGAAAGCCAGCTTCATGTCAAGGGGACTTTCAGAGAGCCCGTCTGAGAGTGCAGCCTCCAAGAGTGGATCAGACACAGAGGCCAACCGTATCACTCAAGGGGAGAGTCCCGCTATGACACCACCCCCTGCAGCAGGACGTAGAATGTCAATGagcatgATCCTGGAACTTTCTTCAATCatgaaaaagtgacattttgcAGATTGAAGTATCAGCTGACTTCTCAGCAGATAGCAGGGATGGACATTGTAATTATGGCAAAATGCTTttacataatctaaaataattgaACTTACTGTAACGCTGTAATACTCTCAATAGAGGCTTAAAATAAGAACAAAGCATTTTCAACACACCCGTTCACAGTACTTGTAGCATTTATGGTTTTAACATGTCAGTAAGAGTTAATTATGAGCATAAATGTGATGTTTTGCACATGAAATTTATGACAAAGCTCAAAGAGCGACCAATTGATATCTATCaaattaaaatcagtttttagaaatgtgaATTGACGGAAGACATTATGTTGAATTTATTAAGGTCTGGGCCTTTgtacaatatgtatatatatatatatatatatatagtggtggCTATCAGTGGATATGTTTGAAtctgttgttttttatgttctttttttaaagtgttgaaAAGACAACTTTggtcttttttttaatcttattttatgttttagcaaATCACCTTGCCATGTACCTTCAATGGAATAAAGTGCTTTTGTATTTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000034930

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034453 True 2114 mRNA 0.43 3 23960525 23964383

Neighbor

gene id symbol gene type direction distance location
XLOC_017307 casp8ap2 coding upstream 4511 23947004 ~ 23956014 (+)
XLOC_017306 NA coding upstream 47919 23910422 ~ 23912606 (+)
XLOC_017305 ginm1 coding upstream 99717 23855025 ~ 23860808 (+)
XLOC_017303 sh3rf1 coding upstream 123558 23742574 ~ 23836967 (+)
XLOC_017304 BX255904.1 coding upstream 193456 23766953 ~ 23767069 (+)
XLOC_017309 BX119992.1 coding downstream 167690 24132073 ~ 24138562 (+)
XLOC_017310 BX901952.1 coding downstream 401564 24365947 ~ 24373933 (+)
XLOC_017311 NA coding downstream 425239 24389622 ~ 24704953 (+)
XLOC_017312 si:dkey-273g18.1 coding downstream 483624 24448007 ~ 24450177 (+)
XLOC_017313 NA coding downstream 790063 24754446 ~ 24754820 (+)
XLOC_017301 NA non-coding upstream 297978 23662006 ~ 23662547 (+)
XLOC_017296 BX323889.2 non-coding upstream 691838 23254477 ~ 23268687 (+)
XLOC_017294 BX323889.1 non-coding upstream 727721 23232690 ~ 23232804 (+)
XLOC_017314 NA non-coding downstream 1127519 25091902 ~ 25095032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_03649878_03651992 GJA10, CX52.6 coding CI01000325 null 3648823 ~ 3652107 (+)
bowfin (Amia calva) AMCG00003630 NA coding CM030121.1 CM030121.1 12147640 ~ 12148899 (+)