XLOC_017309 (BX119992.1)


Basic Information

Item Value
gene id XLOC_017309
gene name BX119992.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24132073 ~ 24138562 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034454
gtgtacacAAGACACCATTTTGGATTATCTACATGAGATTTGAACTGCGTGCCTCTGTTTGAAACTCCAAGGTACTTAACAAGAAAGGATAATTGGATAATTTGGATATTTTCGACGAGGATCCGACCGTGTGAATGTCTTGAGAAGAGAAAGGGGGTAACTATAGCCTAATTTAGCAAGCTAACGTTAGCTGGAGGACTCATTTTCACATCACACACAGATGTCTGCCACCACTGCTAATCTTGAAAAGATGGGTAACCTGCCAGTGACTCCTCATTTGATTCTGCCTGGTTCAGATGATACTTTGGGCCAGTGGATAAAACAATGGATGATCAGCATGGAAGGCAGAGTAATCTGTGAGGGTGAGCATGCACACTGGAATTCCTTCAAAGatGCTTTGCTGGCATAAATCCAGAGAGGGGAACCAAGGCTGTGAGGGGAAATgtgacatcaaaaaaaaaaactggcaagaCAGTTCAGAAGAAGACCATGACTTTAAACCCCAaggtttcaaacattttaaagaaactaATGGACTTTGAATGGgactttatttaaaatgcagcTTGCTTGCACCCCCCTACTTTTGAAACACAGAggacttttttctttatttgctgaaGCTCATTTTAgggctatatatttttatattttatatccaaGACTAAATTGTAAAGTggctatttattaattttttctatGACATTCGGTAAGTTGCTTCTTGTTGTACAATGCTGAATACGATCTTAACATTTCTGGAGAACTTACAATTTTTGCCTGTTCTTTGGCTTaatatttacacaaacacaatgcagattttattttgtgttgtttgaaaataaaaatgtgaaata
>TCONS_00034455
tattatagttatttaaatatttattttaattttgaaaaattataTTGTATGGCTTTATCACGTCTTGCATAATTTTATCATGGCCCTTTCTACACCAAGCCtttcaaaacaaatgataaataacaGAATTAATCTCCAGAATAATTCCTAAATAATACTTTAATCAACCAATTTATTAAAGGTTCAGATGATACTTTGGGCCAGTGGATAAAACAATGGATGATCAGCATGGAAGGCAGAGTAATCTGTGAGGGTGAGCATGCACACTGGAATTCCTTCAAAGatGCTTTGCTGGCATAAATCCAGAGAGGGGAACCAAGGCTGTGAGGGGAAATgtgacatcaaaaaaaaaaactggcaagaCAGTTCAGAAGAAGACCATGACTTTAAACCCCAaggtttcaaacattttaaagaaactaATGGACTTTGAATGGgactttatttaaaatgcagc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096775

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034454 False 854 lncRNA 0.37 6 24132073 24138562
TCONS_00034455 True 457 lncRNA 0.34 2 24133408 24138274

Neighbor

gene id symbol gene type direction distance location
XLOC_017308 cx52.6 coding upstream 167690 23960525 ~ 23964383 (+)
XLOC_017307 casp8ap2 coding upstream 176059 23947004 ~ 23956014 (+)
XLOC_017306 NA coding upstream 219467 23910422 ~ 23912606 (+)
XLOC_017305 ginm1 coding upstream 271265 23855025 ~ 23860808 (+)
XLOC_017303 sh3rf1 coding upstream 295106 23742574 ~ 23836967 (+)
XLOC_017310 BX901952.1 coding downstream 227385 24365947 ~ 24373933 (+)
XLOC_017311 NA coding downstream 251060 24389622 ~ 24704953 (+)
XLOC_017312 si:dkey-273g18.1 coding downstream 309445 24448007 ~ 24450177 (+)
XLOC_017313 NA coding downstream 615884 24754446 ~ 24754820 (+)
XLOC_017314 NA coding downstream 953340 25091902 ~ 25095032 (+)
XLOC_017304 BX255904.1 non-coding upstream 365004 23766953 ~ 23767069 (+)
XLOC_017301 NA non-coding upstream 469526 23662006 ~ 23662547 (+)
XLOC_017296 BX323889.2 non-coding upstream 863386 23254477 ~ 23268687 (+)
XLOC_017294 BX323889.1 non-coding upstream 899269 23232690 ~ 23232804 (+)
XLOC_017315 NA non-coding downstream 1057942 25196504 ~ 25197510 (+)

Expression


Co-expression Network