XLOC_017318 (ccn2a)


Basic Information

Item Value
gene id XLOC_017318
gene name ccn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25340814 ~ 25343490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034464
GTCACTCGACTCGGCTCAGCCTAAACTTCTTACCAAAGCTAAACTCTAGCTTTCACTCAACACGATCAGGAGGAACTGGATTCAAAGACTACACAACGAGATCGACTTGATCAAATCTGAAGAGAAGACTTTGTAGGATCTCAAAAGAAGATTTTTCTTTTTGCTACAAACTTTAAAGAAGTCATCATGTTTTCTGGAATGACTCAAAGTGTGATTGCTCTGCTGTTCCTGACTTTCTTAAGATGGGCTGTGGCTCAAGAGTGCAGTGGACAATGCCACTGCCCTGAAGTGCCGCCCCAGTGTTCACCTGGTGTAAGCCTAGTTCTGGACACCTGTGGGTGCTGCCGGGTGTGTGCCAAGCAGCTGGGCGAGCTGTGCACAGAACGAGATGTTTGCGACCCCCACAAAGGTCTTTACTGTGACTACGGCTCCCCAAGTAACCGTCGTATTGGTGTCTGCACAGCCAGAGATGGTGCCACTTGTGTGTTTGGTGGAATGGTGTACCGCAGTGGAGAGTCTTTCCAGAGCAGTTGTAAATACCAGTGCACGTGTCTGGACGGTGCTGTAGGTTGCGTGCCCCTCTGTGGAATGGACATCAGGCTCCCCAGCCCAGACTGCCCAATGCCCCGCAGGGTGAAAGTGCCTGGGAAGTGCTGCGAGGAGTGGGTGTGTGACTCCCCTCGTCAAAACACCTTTGTGGGATCAGCTTTAGCAGCTTACAGAGAGGAGGAGACATACGGTCCCGATCCCTCCATGATGAGAGAGAACTGCCTGGTTCAGACTACAGAATGGAGCGCATGCTCAAAAACCTGTGGCTTGGGAATCTCTACTCGTGTGACCAATGACAACCGTGAGTGCCGCCTTGAGAAGCAGTCTCGCCTTTGCATGGTCCGCCCTTGCGAGTCACACCTGGAGGAGAAAATAAGGAAAGGGAAAAAGTGCATCCGCACACCACGAGTCTCCAAACCCATGAAGTTTGAGATTTCCGGCTGTACCACTACCAAGTCTTACAGACCCAAGTTCTGCGGCGTTTGCACAGATGGTCGCTGTTGCACTCCTCACAGAACCGCCACCTTGCCCATGGAGTTCAAGTGCCCCGATGGCCAAGTCATGAAGAAGCAGATGATGTTCATCAAGACCTGCGCATGCCACTACAACTGCCCTGGGGAGAACGACATCTTTGAATCCATGTACTACAAGAAGATGGTTGGCGACATGGCGTGAAAAGTCATGACCTGACAAGGAGTTCCATGCAGTGACTGTCCACTTGAATTGAACAGATATCCATCTCATATCTCAGCACAAATTACTTGTTTGTCTTTTTATGGTTTGTTGCTTTCATTTTACGTCTTTTTGCGTGTATGTGTTTGCATCTTGTTGGTGGACTCTGGATTTCTATGCTGTATGTGTATTCATTTGTCATGGTGGATGTCTAAGCCTAGGGGGTGGGGATCGTAAAATGACCGGGCCCTGTTCGGACGCCCCTAAAAAACAATACTGCACTATAGTCCGATGCTGTGACGCCCAATGTCACTGATTGGCAGATGACGCCAAGCCCCTCCTCTAAACTGTGGTGAGCAGATTCAGATTCTGAGAGCAAAAATAGTAAGAAATGGATGGCAGCTTTAACCCCAGAAGCTAATCGCCTCACCAAGCTAAGAAGGCGGAaaaaagagacagagagaaattgaTGTGCTCTTATGTTTAGTTGATATTGTCAGCTCAGAGTTTGATTGAGCTGATCCAAGACATGAAGTTTGGCCAAGAACTATGAAGGTTAATATAGCACTGAGTGTTTGACTGTCTGGCCCCTCCTGTTGGGAAAGAGCCAGTATCCCTGTCAAAAAGACTGGATGAATTGTAGCTTCATTCTTTTTTATGACAATATCTATTtttgaaagctgtaaataatGTACATATTTTGTACAGCTTAAGTTAATTTAAATTGAAAGCATTTTGTCTTCTTATTTCCTTGCTTCGTCATGTTTAATGATAGCTTCATGTGCTGACTTGACTATTCTTGGTACAGCTTGTCCAATATTTTATTGAGAAGTGTGACCAAAATGTTACATGTTTTCACTTTTGtagtttacaataaaatattatatttttatacaaa

Function

symbol description
ccn2a Predicted to enable heparin binding activity and integrin binding activity. Acts upstream of or within with a negative effect on definitive hemopoiesis. Acts upstream of or within several processes, including endoderm development; notochord development; and regeneration. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; fin; head; mesoderm; and spinal cord. Orthologous to human CCN2 (cellular communication network factor 2).

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0031099 regeneration biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0030903 notochord development biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-102 Predicted to enable heparin binding activity and integrin binding activity. Acts upstream of or within with a negative effect on definitive hemopoiesis. Acts upstream of or within several processes, including endoderm development; notochord development; and regeneration. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; fin; head; mesoderm; and spinal cord. Orthologous to human CCN2 (cellular communication network factor 2).

Ensembl:

ensembl_id ENSDARG00000042934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034464 True 2119 mRNA 0.46 5 25340814 25343490

Neighbor

gene id symbol gene type direction distance location
XLOC_017316 moxd1 coding upstream 68936 25225112 ~ 25271878 (+)
XLOC_017317 BX530723.1 coding upstream 103690 25237009 ~ 25237124 (+)
XLOC_017315 NA coding upstream 143304 25196504 ~ 25197510 (+)
XLOC_017314 NA coding upstream 245782 25091902 ~ 25095032 (+)
XLOC_017313 NA coding upstream 585994 24754446 ~ 24754820 (+)
XLOC_017319 fam228a coding downstream 6945 25350435 ~ 25355985 (+)
XLOC_017320 pfas coding downstream 102336 25445826 ~ 25473275 (+)
XLOC_017321 hook1 coding downstream 142531 25486021 ~ 25513483 (+)
XLOC_017322 cyp2v1 coding downstream 189574 25533064 ~ 25558418 (+)
XLOC_017323 BX322665.1 coding downstream 215388 25558878 ~ 25561817 (+)
XLOC_017311 NA non-coding upstream 635861 24389622 ~ 24704953 (+)
XLOC_017327 BX322665.3 non-coding downstream 237416 25580906 ~ 25581456 (+)
XLOC_017331 CR352243.1 non-coding downstream 299554 25643044 ~ 25643755 (+)
XLOC_017339 AL954831.1 non-coding downstream 716220 26059710 ~ 26065944 (+)
XLOC_017340 NA non-coding downstream 752040 26095530 ~ 26359434 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000350_02241412_02243039 CTGF, CTGFA coding CI01000350 null 2241142 ~ 2243276 (-)
bowfin (Amia calva) AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding CM030121.1 CM030121.1 19283996 ~ 19287183 (-)