XLOC_017734 (tsta3)


Basic Information

Item Value
gene id XLOC_017734
gene name tsta3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52458765 ~ 52488233 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035086
AAAGACCGCTATTCGAGCAAGCACCAACATTTATGGGACCGAATATAGACGACTTTAATATATGACATCGTGTTAACTAAAGAGTTTCCTGGCGGTCGTGTGTTTTAACCTGGCGGTCGTGTGTATCAACATTCCGGCTGACGACAGTTTTTATCCTTGACCAAAACAGCTGCGTATAAGTTAAACATTGAAAATATGGCCACCGAGTGATCTGGGTTTCCCGGAAAGGACTTTTGAGACAGCGGAGAACAGatGGACGGGCCGATGCGTGTGCTGGTGACGGGTGGCAGTGGGCTGGTGGGCCGAGCGATAGAGCGAGTGGTGAAAGAGGGAGAAGGAAGAGAAGGAGAAGAATGGATATTCCTGTCGTCCAAAGACGCCAATCTCTTGAGCCCTGAAGAGACTAAAGCAGTGTTTGAGAAGCATCGTCCCACACACGTCATTCATTTAGCTGCGATGGTCGGCGGACTCTTTAGAAACATGAGACAGAACCTGGACTTCTGGAGAAGTAATGTGTTCATCAATGACAACGTGCTGCAGGCGGCTCATGATTCTGGAGTGGTCAAAGTGGTTTCTTGCCTGTCGACCTGCATCTTCCCAGATAAAACCACCTATCCCATAGATGAGACAATGATCCACAATGGTCCTCCACATGAGTCTAATTTCGGGTACGCCTACGCCAAACGCATGATTGATGTCCAGAACAGGGCGTTTTTTCAGCAGTTTAATCGGCGATACACGGCCGTCATCCCCACCAACGTGTTTGGATGCCATGATAACTTCAACATTGAGGACGGTCACGTGCTGCCGGGCCTGATCCACAAGACGTACATCGCAAAAAaggaaGGTAAACCTCTGGTGGTCTGGGGTTCAGGTCGCCCCCTGCGGCAGTTCATCTATTCTCTGGATCTGGCTCGTCTGTTTGTGTGGGTTCTGCGAGAGTATGATGAGGTGGAGCCCATCATCCTATCCGTTGGTGAGGAGGATGAGTTGTCCATAAAGGATGCTGCGGACGCTGTGGTTGAAGCACTGGAGTTTACAGGTGACGTGATCTATGACACCAGTAAAGCAGACGGACAGTTCAAGAAAACCGCCAGTAACGCCAAACTGCGCAAATACCTGCCAGACTTCAAGTTTACTCCATTCAGAGAAGCCATCAAGGAGACGTGCGATTGGTTTGTGGCCAATTATGACACCGCCCGTAAATGAAGATCCTCACTTCTCATTGGAGAGTTTGAACACTGTTTAATGCTGGAAACCAAACAGGACAGACACTTTTAacatctattttattattattatttttttaacagaatcaTTTAGCACTGTGTTTATTTAACGTTTTTCACACAAGCGTTTCCATTTGCAAAAACTACAACATGCTCTATTGCACATTGCCTGATCTGACTGCGCCATCTAGTGGACATCATCAGCGATTGgtgcattttaaaacatgaagaaatactatagtgatttatagtaaatactgttttTGGACCATAGCTATAGTAGTCTGTTATAGGGtaaatattaaagtatttacAACTTTTTGTCACgaatgctacagaatactgtagTATTACCTAGTGATAAACTCTACTAAATGTACTATAAAAACTGTA

Function

symbol description
tsta3 GDP-L-fucose synthase

GO: NA

KEGG:

id description
ko00051 Fructose and mannose metabolism
ko00520 Amino sugar and nucleotide sugar metabolism
ko00541 O-Antigen nucleotide sugar biosynthesis

Ensembl:

ensembl_id ENSDARG00000039666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035086 True 1622 mRNA 0.45 10 52458765 52488233

Neighbor

gene id symbol gene type direction distance location
XLOC_017733 arhgap39 coding upstream 11232 52389858 ~ 52447533 (+)
XLOC_017732 CU550702.1 coding upstream 155691 52299192 ~ 52303074 (+)
XLOC_017729 NA coding upstream 223325 52092585 ~ 52235440 (+)
XLOC_017731 NA coding upstream 250394 52203395 ~ 52208371 (+)
XLOC_017730 NA coding upstream 255624 52199291 ~ 52203141 (+)
XLOC_017735 GFUS coding downstream 3959 52492192 ~ 52525680 (+)
XLOC_017736 pycr3 coding downstream 40811 52529044 ~ 52544771 (+)
XLOC_017737 eef1db coding downstream 57953 52546186 ~ 52582645 (+)
XLOC_017738 si:dkey-235d18.5 coding downstream 96299 52584532 ~ 52725696 (+)
XLOC_017739 NA coding downstream 110241 52598474 ~ 52638326 (+)
XLOC_017728 CU179729.1 non-coding upstream 376265 52064027 ~ 52082500 (+)
XLOC_017740 NA non-coding downstream 182626 52670859 ~ 52671192 (+)
XLOC_017742 CU207296.1 non-coding downstream 431623 52919856 ~ 52919986 (+)
XLOC_017743 NA non-coding downstream 455890 52944123 ~ 52949831 (+)
XLOC_017744 NA non-coding downstream 647203 53135436 ~ 53152423 (+)

Expression


Co-expression Network