XLOC_017751 (bub1ba)


Basic Information

Item Value
gene id XLOC_017751
gene name bub1ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53474963 ~ 53509973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035107
CGTACGACACAGTCACGTGATACGATTTGAAATTAAACCTCGAGTCACTCAACAACAACACCACCGCTGTCAGCGCTTTGTTGAAGCTAGCAAGAATATTTAATGAGAAACCTTCGCTCAGGATGGCTGTAAGACTTGAAAAATCTCAGGGCCTGAAGATGGATGAACTGTCTTCACACACTTGGAGTGCTCTGGGCATCCAGGTGGAGGCTGTGGCCCCGTTCCAGAAAAGCCAGACTCAAGAAGGGCTCAGGGGTCAAAGGGAGGATAACCTGGAGATCATGTacaataaagatcagatttaccAAGGAGACGTAGAGTTCAGCATCGAGGAGCTCCGTGCGCAGCGCTACTACAAGGCTATGAGAGAAAAAGCTTCACACCTGAACAAAATGAAGCAGGACTTGCAGCTACAGATCGAGCAGGCACAGAGAAAACTTCACCAGAGAAGCAGCACGGCGGCTCCACAGCAGCGCTTTCCTGAAGACAAAAGAGAGGCCAGTTCTTCCATCCAGAGACCTACAGGTTCATGTGAATCTGCTGCTGATACAGTGAAATCTGCTCCGTTGGTGATATACAGTGAGCAGGAAGAAGGATGTGCGGTTTCCAGTAGCAGTTCAGTGAGTCGAGAGGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGCAAAACCTTTCACCATTTATGATGAGAGTACACAGACGAACAAAATTAGCAGTTCGGTGAGTCGAGAGGACGAAATAAATCAAAGTGGAAGTGACGCAAAACTGCAGAAAACAGCAAAAACTTTCACCATTTATGATGAAAATTCACAGACAAACAAAATCACTTCAGTGAGTCGAGAAGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGGAACAGGAAAGCCTTTCACCATGTTTGAGGATAATGCACAGACAAGCAAAACGTCCTCTTCTACAAACCGTAAATCTCTAAAGCTGCCCACATTGAGTCTGAAAGCACCGAAGTCTAAAGCAGAGCTGGTCACAGACAAAGACGCCTCCATCTCTCGCTCAGAGGAAGCCATCATTAATGGTCACAGGAATAAGACTCTGTGCCGCAGTCCAAATGACACGTGTGAATTTGCTCGCGCAGCTCAGCTCGCGTCCAGTCCGTTTGCAGGAGTCGACAGGCAGAAAACACCAGAAACGGGGCTGATGGAGAATCTGAGCCCAGCAGATCCTGAAAGCACTAAAGCTGCAAACATTAATGAAACGCCAGAGGAGAAAAAGCTCAGtCCTATCCTGGAGATCAGTCAGGAGTGGGGCGGCTCTACTTTTTGTCAGGATCCCACGAAACGCTTGAATGATGCAGAGAGCAGCCGATCTGCGGAGAGACCAGAGACTGAGCTGGAGAACGTCAGTAAATGGCAGGATGTCTGCAGTCTGCATGTGAGATCCAGGATCTTCGACCAATCAGATGTGACGTCCTTGCCCAACTTCCACAGGAAAGCTGGACTTCTGCCTGACACCAGCGATGATCTGCATCTCGATGGAGAGCAGcttttttactgtagtaaactgGGATCAGTGAAGGACTTCAGCCTGTACTCATCTGGAACTGCTGCTGTCCTGCTGAAGACTGACAGGTCTTCAGTGCCGTGGGATTTCTTCATCATTTCTCAGCTCAGATCTCGAGGCTGCTGTGATGAACAGGGCTGTGACGTCCAGATATCCTGCCATATGTTTGAGAACGGCAGTGTTACTCTGTGGAGGATTCCTCACGGGGACACCCTGCAGGATTTGCTCTGTGAACCCTTGGCCAGACATGATGCTTGTCTGCTGGTGATTCTGCTGCTGGAGCTGGTCAGATGCTTTCATTCCTGCCGGCTGCTGCATGGGGGCCTGAAACCGGAGTCGCTCTACTTTTACCACAGTGGACTCACAGCTCTGGATTTCTCAGACTCTGTGGATCTTCATCTCCAGACTGACGTCACAGAAGCTCAAGATCTTCCTTCAGCACAGCAGTTCATCCAACAGGGGCTTCTGGCGCCGTCAGCATCACCTTACCAGGTTGATCTGATCAGCGTGGCTGAAATCACACACCGCCTGCTGTTCAACGCTCCTCTGCAAGTGAAGCTAGTGGATTCAGTCTGGCGTCTGGACGAGGACTCTGCATCTCAGCATGGTTGTCCTGTGGAGCCGCTCTGGAGGGAGTTTTTCCACATGATCTTGAATCCAGAAAAATCTTCAGAGCTTGTTTTGTCCGACCTCATCAATAACGTGAAGAACAgcttataaaaaataacatgttcagtattacactgtaaaataatctGCTTTTGTATGTGCATTAGATATGACggctattaaattaatattatatattgctCTTTATACACATTAA
>TCONS_00035108
ATGGCTGTAAGACTTGAAAAATCTCAGGGCCTGAAGATGGATGAACTGTCTTCACACACTTGGAGTGCTCTGGGCATCCAGGTGGAGGCTGTGGCCCCGTTCCAGAAAAGCCAGACTCAAGAAGGGCTCAGGGGTCAAAGGGAGGATAACCTGGAGATCATGTacaataaagatcagatttaccAAGGAGACGTAGAGTTCAGCATCGAGGAGCTCCGTGCGCAGCGCTACTACAAGGCTATGAGAGAAAAAGCTTCACACCTGAACAAAATGAAGCAGGACTTGCAGCTACAGATCGAGCAGGCACAGAGAAAACTTCACCAGAGAAGCAGCACGGCGGCTCCACAGCAGCGCTTTCCTGAAGACAAAAGAGAGGCCAGTTCTTCCATCCAGAGACCTACAGGTTCATGTGAATCTGCTGCTGATACAGTGAAATCTGCTCCGTTGGTGATATACAGTGAGCAGGAAGAAGGATGTGCGGTTTCCAGTAGCAGTTCAGTGAGTCGAGAGGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGCAAAACCTTTCACCATTTATGATGAGAGTACACAGACGAACAAAATTAGCAGTTCGGTGAGTCGAGAGGACGAAATAAATCAAAGTGGAAGTGACGCAAAACTGCAGAAAACAGCAAAAACTTTCACCATTTATGATGAAAATTCACAGACAAACAAAATtAGCACTTCAGTGAGTCGAGAAGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGGAACAGGAAAGCCTTTCACCATGTTTGAGGATAATGCACAGACAAGCAAAACGTCCTCTTCTACAAACCGTAAATCTCTAAAGCTGCCCACATTGAGTCTGAAAGCACCGAAGTCTAAAGCAGAGCTGGTCACAGACAAAGACGCCTCCATCTCTCGCTCAGAGGAAGCCATCATTAATGGTCACAGGAATAAGACTCTGTGCCGCAGTCCAAATGACACGTGTGAATTTGCTCGCGCAGCTCAGCTCGCGTCCAGTCCGTTTGCAGGAGTCGACAGGCAGAAAACACCAGAAACGGGGCTGATGGAGAATCTGAGCCCAGCAGATCCTGAAAGCACTAAAGCTGCAAACATTAATGAAACGCCAGAGGAGAAAAAGCTCAGtCCTATCCTGGAGATCAGTCAGGAGTGGGGCGGCTCTACTTTTTGTCAGGATCCCACGAAACGCTTGAATGATGCAGAGAGCAGCCGATCTGCGGAGAGACCAGAGACTGAGCTGGAGAACGTCAGTAAATGGCAGGATGTCTGCAGTCTGCATGTGAGATCCAGGATCTTCGACCAATCAGATGTGACGTCCTTGCCCAACTTCCACAGGAAAGCTGGACTTCTGCCTGACACCAGCGATGATCTGCATCTCGATGGAGAGCAGcttttttactgtagtaaactgGGATCAGTGAAGGACTTCAGCCTGTACTCATCTGGAACTGCTGCTGTCCTGCTGAAGACTGACAGGTCTTCAGTGCCGTGGGATTTCTTCATCATTTCTCAGCTCAGATCTCGAGGCTGCTGTGATGAACAGGGCTGTGACGTCCAGATATCCTGCCATATGTTTGAGAACGGCAGTGTTACTCTGTGGAGGATTCCTCACGGGGACACCCTGCAGGATTTGCTCTGTGAACCCTTGGCCAGACATGATGCTTGTCTGCTGGTGATTCTGCTGCTGGAGCTGGTCAGATGCTTTCATTCCTGCCGGCTGCTGCATGGGGGCCTGAAACCGGAGTCGCTCTACTTTTACCACAGTGGACTCACAGCTCTGGATTTCTCAGACTCTGTGGATCTTCATCTCCAGACTGACGTCACAGAAGCTCAAGATCTTCCTTCAGCACAGCAGTTCATCCAACAGGGGCTTCTGGCGCCGTCAGCATCACCTTACCAGGTTGATCTGATCAGCGTGGCTGAAATCACACACCGCCTGCTGTTCAACGCTCCTCTGCAAGTGAAGCTAGTGGATTCAGTCTGGCGTCTGGACGAGGACTCTGCATCTCAGCATGGTTGTCCTGTGGAGCCGCTCTGGAGGGAGTTTTTCCACATGATCTTGAATCCAGAAAAATCTTCAGAGCTTGTTTTGTCCGACCTCATCAATAACGTGAAGAACAgcttataa
>TCONS_00035109
AAAAGCTTCACACCTGAACAAAATGAAGCAGGACTTGCAGCTACAGATCGAGCAGGCACAGAGAAAACTTCACCAGAGAAGCAGCACGGCGGCTCCACAGCAGCGCTTTCCTGAAGACAAAAGAGAGGCCAGTTCTTCCATCCAGAGACCTACAGGTTCATGTGAATCTGCTGCTGATACAGTGAAATCTGCTCCGTTGGTGATATACAGTGAGCAGGAAGAAGGATGTGCGGTTTCCAGTAGCAGTTCAGTGAGTCGAGAGGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGCAAAACCTTTCACCATTTATGATGAGAGTACACAGACGAACAAAATtAGCACTTCAGTGAGTCGAGAAGACGATATGAATCAAAGTGAGTTCTGGA
>TCONS_00035110
TCTGCTGCTGATACAGTGAAATCTGCTCCGTTGGTGATATACAGTGAGCAGGAAGAAGGATGTGCGGTTTCCAGTAGCAGTTCAGTGAGTCGAGAGGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGCAAAACCTTTCACCATTTATGATGAGAGTACACAGACGAACAAAATTAGCAGTTCGGTGAGTCGAGAGGACGAAATAAATCAAAGTGGAAGTGACGCAAAACTGCAGAAAACAGCAAAAACTTTCACCATTTATGATGAAAATTCACAGACAAACAAAATtAGCACTTCAGTGAGTCGAGAAGACGATATGAATCAAAGTGGAAGTGATGCAAAACTGCAGAAAACAGGAACAGGAAAGCCTTTCACCATGTTTGAGGATAATGCACAGACAAGCAAAACGTCCTCTTCTACAAACCGTAAATCTCTAAAGCTGCCCACATTGAGTCTGAAAGCACCGAAGTCTAAAGCAGAGCTGGTCACAGACAAAGACGCCTCCATCTCTCGCTCAGAGGAAGCCATCATTAATGGTCACAGGAATAAGACTCTGTGCCGCAGTCCAAATGACACGTGTGAATTTGCTCGCGCAGCTCAGCTCGCGTCCAGTCCGTTTGCAGGAGTCGACAGGCAGAAAACACCAGAAACGGGGCTGATGGAGAATCTGAGCCCAGCAGATCCTGAAAGCACTAAAGCTGCAAACATTAATGAAACGCCAGAGGAGAAAAAGCTCAGGTACTTCAGTCTGACTGATCTGTAGATGGGTTTCCAtctaaagatgcaaattaaatttatcagCAAATATCACATAAAGATTTGTGAATAAAGCATTGTTTGCATTTAA

Function

symbol description
bub1ba Predicted to enable protein kinase activity. Predicted to be involved in meiotic sister chromatid cohesion, centromeric and mitotic spindle assembly checkpoint signaling. Human ortholog(s) of this gene implicated in colorectal cancer and mosaic variegated aneuploidy syndrome 1. Orthologous to human BUB1B (BUB1 mitotic checkpoint serine/threonine kinase B).

GO:

id name namespace
GO:0051754 meiotic sister chromatid cohesion, centromeric biological_process
GO:0007094 mitotic spindle assembly checkpoint biological_process
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-120 Predicted to enable protein kinase activity. Predicted to be involved in meiotic sister chromatid cohesion, centromeric and mitotic spindle assembly checkpoint signaling. Human ortholog(s) of this gene implicated in colorectal cancer and mosaic variegated aneuploidy syndrome 1. Orthologous to human BUB1B (BUB1 mitotic checkpoint serine/threonine kinase B).

Ensembl:

ensembl_id ENSDARG00000078825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035107 False 2394 mRNA 0.48 21 53474963 53509973
TCONS_00035108 False 2169 mRNA 0.49 20 53475811 53509867
TCONS_00035109 False 404 mRNA 0.46 5 53484299 53495286
TCONS_00035110 True 861 lncRNA 0.43 9 53486019 53497162

Neighbor

gene id symbol gene type direction distance location
XLOC_017750 apobb.2 coding upstream 4711 53439665 ~ 53470252 (+)
XLOC_017749 NA coding upstream 70426 53403053 ~ 53404537 (+)
XLOC_017748 cdc40 coding upstream 72964 53368611 ~ 53401999 (+)
XLOC_017747 gpr6 coding upstream 195216 53278746 ~ 53279747 (+)
XLOC_017746 FIG4 coding upstream 212653 53181017 ~ 53262310 (+)
XLOC_017752 pak6b coding downstream 11675 53521648 ~ 53568849 (+)
XLOC_017753 myh6 coding downstream 67529 53577502 ~ 53583436 (+)
XLOC_017754 slc25a47a coding downstream 118561 53628534 ~ 53641863 (+)
XLOC_017755 NA coding downstream 292548 53802521 ~ 53810931 (+)
XLOC_017756 NA coding downstream 355160 53865133 ~ 53870405 (+)
XLOC_017744 NA non-coding upstream 322540 53135436 ~ 53152423 (+)
XLOC_017743 NA non-coding upstream 525132 52944123 ~ 52949831 (+)
XLOC_017742 CU207296.1 non-coding upstream 554977 52919856 ~ 52919986 (+)
XLOC_017740 NA non-coding upstream 803771 52670859 ~ 52671192 (+)
XLOC_017757 NA non-coding downstream 388110 53898083 ~ 53903358 (+)
XLOC_017763 NA non-coding downstream 548023 54057996 ~ 54059266 (+)
XLOC_017765 CU633785.1 non-coding downstream 579007 54088980 ~ 54107941 (+)

Expression


Co-expression Network