XLOC_017761 (si:dkey-241l7.2)


Basic Information

Item Value
gene id XLOC_017761
gene name si:dkey-241l7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54034512 ~ 54035844 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035129
TTAGTCTACTTGTTCACCATCATGGCCACCAATCCAGCAGCGTGTGCAGTGTTCCAGTTGCTGTCAGTAATTTCCTTCAGCTGTGTTGATCTTCAGCTCAATCTGTATCACCTGTATGAGTTGATCAGTGAGTGTATTTGACAGCAGGGCTGATTCAGCATCTTCACACACTCTTCATCTGAAGCTTCACTGAAGGTGATCATCTGCAGACCAAGGTTCATGATGTTCCTGCTGAGGAGTCTTCTGCTGCTTTCTATCGTGTTCTCCATGGAGGGTGCAGATGAGGAGCGACTTCGCTGTGAAAGAGGCTGGAGCGGGTCTGGCTCTCGCTGCTTCAGGTTTTTCTCCAGGTCTGTGAACTGGGTCACAGCAGAGAGAAACTGTCAGAGTCTTGGAGGGAATCTGGCTTCTGTGCATGATCAAGTGGAGAATGACTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGGCCATGATGGTGAACAAGATGGACAGTGGTTGTGGTCTGATGGATCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGCCTAGTAGCGGGTCTGAACACTGCTTGGAGATCAACTGGACATCGGACCGTTGCTGGAACAATCAGGGCTGTTCGACCCGAATGGGCTATCTGTGTGCTAAACGGCGTGTACCGTGTTAGTGTGACTGTAACTTCACCTGAGTCTTCTCTCTGTTTTTCACATCAAACCAATAAAAGTGGAGTAAATGGTTA
>TCONS_00035130
ACACACTCTTCATCTGAAGCTTCACTGAAGGTTCATGATGTTCCTGCTGAGGAGTCTTCTGCTGCTTTCTATCGTGTTCTCCATGGAGGGTGCAGATGAGGAGCGACTTCGCTGTGAAAGAGGCTGGAGCGGGTCTGGCTCTCGCTGCTTCAGGTTTTTCTCCAGGTCTGTGAACTGGGTCACAGCAGAGAGAAACTGTCAGAGTCTTGGAGGGAATCTGGCTTCTGTGCATGATCAAGTGGAGAATGACTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGGCCATGATGGTGAACAAGATGGACAGTGGTTGTGGTCTGATGGATCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGCCTAGTAGCGGGTCTGAACACTGCTTGGAGATCAACTGGACATCGGACCGTTGCTGGAACAATCAGGGCTGTTCGACCCGAATGGGCTATCTGTGTGCTAAACGGCGTGTACCGTGTTAGTGTGACTGTAACTTCACCTGAGTCTTCTCTCTGTTTTTCACATCAAACCAATAAAAGTGGAGTAAATGGTTA
>TCONS_00035131
GGTGATTTTACACACCAAGAGCTGCTGAGCAGCTTTATACTGAGCATTTTCCTAAGTATCTTCTCTCCTCTGTTAATGTTCAGGTTCATGATGTTCCTGCTGAGGAGTCTTCTGCTGCTTTCTATCGTGTTCTCCATGGAGGGTGCAGATGAGGAGCGACTTCGCTGTGAAAGAGGCTGGAGCGGGTCTGGCTCTCGCTGCTTCAGGTTTTTCTCCAGGTCTGTGAACTGGGTCACAGCAGAGAGAAACTGTCAGAGTCTTGGAGGGAATCTGGCTTCTGTGCATGATCAAGTGGAGAATGACTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGGCCATGATGGTGAACAAGATGGACAGTGGTTGTGGTCTGATGGATCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGCCTAGTAGCGGGTCTGAACACTGCTTGGAGATCAACTGGACATCGGACCGTTGCTGGAACAATCAGGGCTGTTCGACCCGAATGGGCTATCTGTGTGCTAAACGGCGTGTACCGTGTTAGTGTGACTGTAACTTCACCTGAGTCTTCTCTCTGTTTTTCACATCAAACCAATAAAAGTGGAGTAAATGGTTA

Function

symbol description
si:dkey-241l7.2 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-240 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000105335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035129 False 753 mRNA 0.49 6 54034512 54035844
TCONS_00035130 False 568 mRNA 0.51 6 54034677 54035844
TCONS_00035131 True 621 mRNA 0.50 5 54034726 54035844

Neighbor

gene id symbol gene type direction distance location
XLOC_017760 si:dkey-241l7.3 coding upstream 5390 54027778 ~ 54029122 (+)
XLOC_017759 si:dkey-241l7.4 coding upstream 8565 54024559 ~ 54025947 (+)
XLOC_017758 si:dkey-241l7.5 coding upstream 15228 54018005 ~ 54019284 (+)
XLOC_017757 NA coding upstream 131154 53898083 ~ 53903358 (+)
XLOC_017756 NA coding upstream 164107 53865133 ~ 53870405 (+)
XLOC_017762 wdr20b coding downstream 1137 54036981 ~ 54051196 (+)
XLOC_017763 NA coding downstream 22152 54057996 ~ 54059266 (+)
XLOC_017764 rps29 coding downstream 43497 54079341 ~ 54085949 (+)
XLOC_017765 CU633785.1 coding downstream 53136 54088980 ~ 54107941 (+)
XLOC_017766 NA coding downstream 129454 54165298 ~ 54174326 (+)
XLOC_017755 NA non-coding upstream 223581 53802521 ~ 53810931 (+)
XLOC_017749 NA non-coding upstream 629975 53403053 ~ 53404537 (+)
XLOC_017744 NA non-coding upstream 882089 53135436 ~ 53152423 (+)
XLOC_017778 NA non-coding downstream 399840 54435684 ~ 54440337 (+)
XLOC_017781 NA non-coding downstream 790325 54826169 ~ 54830590 (+)

Expression


Co-expression Network