XLOC_017893 (trappc8)


Basic Information

Item Value
gene id XLOC_017893
gene name trappc8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6308564 ~ 6476705 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035313
ATGGCTCAGTGCGTGCAGTCCGTGCAGGAGTTCATCCAGGACTCGTTCGTGCCGATGGTGGCCGTCCTGTGCAGTGAGGATGCCGAGAGAGTGACCCGCAAAAACAACCTGAGTTTCCCCGAGCTGCTGCGGCCTTTCTGCCGCCTGACGTCCGAGGGTCATCTGCGGGACCCCAATAACCAGGTGGTCGTGGTGAAGGGCCTGCGGATCAGCGTGACGGGGATCAACACTCGTCCTCCACAGACTCCCGAGCTGCAGAGAGTCCTCAGCCAGGCTGTGTCCATCTGCCAGCCTCCTGAAGGGTCGCCCGCTAACGTCATCACGGCTGGAGACTATGACCTCAACATCAGCGACCGCACGGTCAAAGCGAGCGTTCCCTGGTACTCTGACTGGAAAGAAACACTCACCCAGCTGAGCTCCTCCAAGTACTACACAGCAACAACGCCGTGGTTTGAGACGTACCGGGAGAACTTCCTGCAGTCCATGCCAGCGTCAGAGCACGAGTTTCTCAGCCACTACCTGGCTTGTATGTTGGTGGTCTCGTCCAATGAGGCTGTGCCGACAGAGCAGTTTCTGAAGCTGTCCCAGGAACAGCACCGAattcagcacagtggagattacaCACACCCCAAATGGTTCATTCCCAACACGCTCAAATATTACGTCCTACTGCATGACATCAGCGACGGAGACGAGCAGAGgGCGGACTCTGTGTATGAGGATATGAAGCAGCGGTATGGCACTCAGGGCTGTTACCTGCTCAAGATAAACTCCCGCAGCGGCAGCACTGGTGCGGACGAGCAGATGCCGGACCCCTGGAGTCAGTACTTGCACAAGACCAGCATACACAACCCTGAGCTGTATGAAGAATCTGCAGTGAATAATGCAACTGAAAACAACATCAGCGCAGAGGAAGACGGTCTAGATCCTGCAGTTAGAGACGGTGTTTCAGACACTCATCCTCTTCAGCTTGACTCACCGTCCGATGCTCTCATCGATGAGAGTCAGGCTGTAAACAGTGCAAATATGACGAAAGCTCTGAAGCAAGCCAGTGTGAGCTCTAACAGCAGCCCGACTCCCAGAGGAACATGCCTGACCCTTAATGATCACGACCACATCCGGCAGTTCATCCAGGAGTTCACCTTCAGGGGATTACTGCCGCACATCGAGAAGAACATTCGCCAGCTCAACGACCAGCTTGTCTCCAGAAAAGGACTGAGCCGATCTCTCTTCTCCGCCACTAAGAAGCTGTTTGGTGGTGGGAAGGTTCCAGAGAAGAGCATCGCTGAGCTGAAGAACACTGCAGGCCTGCTATATCCCTCTGAGGCGCCGGAGCTTCAGATCAGGAAGATGGCTGACCTCTGCTTCCTGGTCCAGCATTATGAACTGGCCTACAACTGCTATCACACTGCCAAGAAGGATTTTctgtcagaccaggcaatgttgtATGCGGCTGGAGCGCTGGAGATGGCGGCTGTTGCTGCTTTTCTACAGAGCGGAGCGCCGAGACCGTACCCCGCTCACTACATGGACACCGCCATTCAGACCTACAGAGACGTCTGCAAAAACATGCTTTTGGCTGAGAGGTGTTGCCTTTTAAGTGCTGAGATTTTAAAGAGTCAGGCGAAATATTCAGATGCTGCTACACTTCTGATCAAAATGACCAGTGAGGACTCTGACCTGCGCAGTGCACTTCTGTTGGAGCAGGCGGCTCACTGCTTTATTAATATGCGTAGTCCTATGGTCAGGAAGTTTGCCTTCCACATGATACTGGCCGGCCATCGATTCAGCAAAGCTGGACAGAAGAGACATGCACTGAGATGCTACTGCCAGGCCTTGCAGGTGTATAAAGGTAAAGGTTGGACGCTAGCTGAAGATCACATCAACTTCACCATCGGCCGGCAGTCCTTCACCCTGCGGCAGCCGGAGAACGCCGTGGCCGCTTTCAGACACATCCTCATCAATGACAGCAAACAGTCCGCAGTGCAGCAGGCTGCTTTCCTCAGGGAATACCTCTATGTGTACAAGAGCATGAGTCAGGTGAGCGGTGAGAGCTCTCTCCCACAGCTGCCACTACCCTGCCTGCACAGCTCACAGACGCGCGTGTTCTTCGGCCATGAGCGCAGACTCGCTGAAGGCGAGAAACAGGCTGCTACACACGTGTCTTTGGACCAGGAGTTTGACAGGGATTCTTCTCAGCTGTGGAAAGAGTTGGAGGAGAGAGTCGTCGCCGCAGCAAACAGGGGAAGCGTTCCCAACACCTTCCAGCCATCCCAGTGCTGCCTGAACAGCCAGACGGACAACCTCCGATATCCACTCGCCGTGGTGGAGGAGCCCATCATCGTGGAGGTGGTTTTCCGCAACCCCTTGAAGGTTCCCTTAGCTCTGTCGGCTCTGTCTCTGCTTTGGAAGTTTACAGTTAAAGACTTCTCAGGCCTTCAGGACAGCACAAGCGGAGAAACCATCAGCAATGAGAAAGAGGCAGCGGCTCTGAAAGAAACCACGGCTCTCGATGACATCATCGATACGCAAGTCATTCCAGAGTTCACCATCAGTCCAGAGGAGACCAAAGTGGCACGGTTGAAATTGCTTCCTCGTAAGACAGGAGAGTTGCATGTTCTCGGTGTTGTGTATAACCTGGGCACTGGAGAAGTCGGCAACAGTGAAGGCTCATTGGCCAGTGATGTTATGTGTGTTCGTGGACAGCAAAATCTGGAGATCCAGGGGCCCAGACTCAATgtgaccaaagaagaaaagactTCAGTCAAATATGGACCAGACCGCCGTCTGGACCCCATCATCACCCCAGCCATGCCCTTACTGGAGGTGTTTTTCATCAACTTCCCCACTGGTTTATTGTGCGGTGAGATCCGCAAAGCTTGGGTGGAGTTTGTGAATGTGAGCGGCGTTCCTCTGACGGGTCTTAGAGTAGCGTCCACTCATCCAGAGTTCTTCACGTTTGGGAGCGCCACCTCAGACCTCACCCCAGTCTCCCCTACAGCAGCCGAGCACTGCTCTGCATACAAGACTGTGGCCACAGCGCCATCACAGGCCTCCGTTTCACTCGTGTCTCCGGCAGCGTTCGGGGTCTCCAGCAGTGACCGGCCCATGGTGGCTGAGATCCCCCTATCCCGAGGCTTACTAGGACCAGGGGATGCCTTACAGATCCCGCTATGGCTCAGAGGACCTGACAGAGAGGGCGTTCATGAAATCAACTTCCTCTTTTACTATGAGAGTACAGAGAAGGCTGCCAAACTCAGTCACCGGGTCCTTCGACACACTGCTTTCATATGTGCGAGTCGATCGCTGAGCATCAGAGCCACGGCCAGCCAGAGCAACACGCTGTacagtagagagagagagaaaccagAGGCCGGAGACGGAGAGGAGAAGAACACCAGCATGCTGGTCTTTGTGGATGTGGAGAACGTTAATACGAGTGAAGCAGGTGTTCGTGAGTTCCACATAGTCCAGGTGTCCAGCAGCAGTCGGCAGTGGAGGCTGCACAAGTGCATCAACCCTGTGGGAGACAGAGACACTAAGCTGGCCAGCAGAGAGAGGGGGAAACTGTGCTTCAAAGCCACCAGATGCAAAACAGAGGAAGCTACGTCAGACGCAGCAGGAAAATACACATTTGCCGACCTCAACCTTGGCAGTGAACAAATCGTCAGCTCCACCACTCCGTGTGCTGATTTTTTCTTCCGTCAGGGTTTGCCCTCTGAGCCCAGGAGAGGGGTCGTGTCTGCAGGCGGTGTTAGTCAAATGAGGAGACAGAGCCTCACGCCACAGAGCGGGATTGACGATGATGTGACGAGCATTGTTCGAAAATGCAGCGAAGTAGAGCTTGACATCATCGTCCTCTGGAAGGCATATGTTGTGGAGGACAACAAACAGCTCATTTTAGAGGGACAGCTTCACGTTGCACTGCAAACCATTGGAAAAGAAGCCTGCTCGCTGTCGCAGAAAGAGGAAACTCAAGAAATGGTTCTTCTGAAGTTCAAGCCTGATCTTCCTCCTCCTGTAAGCAAGCCCTCGCTGGAGCAGCTTTCCCACCTCATAAAGACCTGCCTCCACTACCCAGAGTCTTACGATCATCCCTTCCCACAAAAGAGGTTATGTATGGTACCAGTCACCTTGATGCTGTCCAACTGTTCCTTGGCTCAGGTAGACGTCATCATCGATCTGCGGCATAAAACAACCAGCCCAGAGTCCCTGGAAGTGCATGGTTCATTTAGCTGGCTGGGCCAGACCCAATATAAGTTGCAGCTTCAAGCACAAGAGGTCCATAGGCTCTCCCTGAAAGCCTGTTTCTTCCAGGCTGGAGTTTATAATTTGGGCACACCCCGGGTCTTCGCCAAGTTGGCACAGACCAGCGCTATGTGTGAGACCAGCCAGCAGAGCGCCATGCCTGCTCTCATCATCATCAACAGTGTTTGA

Function

symbol description
trappc8 Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8).

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-601 Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8).

Ensembl:

ensembl_id ENSDARG00000038866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035313 True 4437 mRNA 0.54 30 6308564 6476705

Neighbor

gene id symbol gene type direction distance location
XLOC_017892 opn7a coding downstream 29747 6241855 ~ 6278817 (-)
XLOC_017891 NA coding downstream 93807 6212846 ~ 6214757 (-)
XLOC_017890 b4galt6 coding downstream 111575 6163932 ~ 6196989 (-)
XLOC_017889 pum2 coding downstream 176740 6089507 ~ 6131824 (-)
XLOC_017888 CABZ01062796.1 coding downstream 273494 6028201 ~ 6035070 (-)
XLOC_017894 NA coding upstream 1805 6478510 ~ 6480513 (-)
XLOC_017895 mcm3l coding upstream 39818 6516523 ~ 6532462 (-)
XLOC_017896 CT583652.1 coding upstream 105094 6581799 ~ 6583670 (-)
XLOC_017897 igfbp1a coding upstream 332069 6808774 ~ 6812688 (-)
XLOC_017898 adcy1a coding upstream 418181 6894886 ~ 7000225 (-)
XLOC_017928 CU539064.1 misc upstream 3576700 10053405 ~ 10053701 (-)
XLOC_017887 CABZ01062797.1 non-coding downstream 285455 6012451 ~ 6023109 (-)
XLOC_017886 CABZ01064253.1 non-coding downstream 312861 5995589 ~ 5995703 (-)
XLOC_017885 BX088548.1 non-coding downstream 694568 5613879 ~ 5613996 (-)
XLOC_017902 NA non-coding upstream 661358 7138063 ~ 7139142 (-)
XLOC_017904 NA non-coding upstream 715178 7191883 ~ 7211196 (-)
XLOC_017907 NA non-coding upstream 1135450 7612155 ~ 7638652 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_01560871_01627451 TRAPPC8 coding CI01000051 null 1560828 ~ 1627665 (-)