XLOC_017910 (plpp3)


Basic Information

Item Value
gene id XLOC_017910
gene name plpp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7964356 ~ 8024582 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035335
ccCACATCCTATCTGCTCcatccatagactgtaaaagatccATCCAACCCATGTCCGAAGGTCTGGCTAGAGTGCGTTTCCAGCAGTGTCCGCTGGAGTCAGTGTCCGCCCGTATCTGAGTGCGACTCGAGACCGCGTTTACTCCAGCGCTCTTCTCCACTTTCATTCAGCGTGACTCTTTCGGGATAACGTTAGCAGAAGTGGGGAAGGGGCTGAACGCTCGCTGAAGGGAAGGAGGTGGAGACCGAAGGAGGATTCATAAACAGGAGTTGATCTCCTAGTTTTAAAACGCCTCTCTCAATTCAGACCTTCAAGTAGCGTAGCGACAGAACTAAACCACAACTCACTGACCGCCGCATCATTCAGAGAAAGCGAAGAAGAAAAGCCGCTTCTCAAAAAACACCGCGCGCTTTACCAGACGACAAAAGTTGAGTGGACTTGATTGCACGGGACATCTCAGTGTTTTCATTAACTTCCCAGGACGTCTTCccacttgttgttgttttttttttcttttttttgtttgtttgttttttcttttttttcggaAACTTCTTTAAACTTTATATACGACACGTCCTTTGCTGACAAGACCACTGTGCAAAACAAATATCTGggattttttttaggaaaaagaCATCAGAAGGAACTCTAACAAATGCAAAACTATATGTATGAGAAGGCGATGGCACCCGAAACTAGAAACGGAGGAACGTCCACGTTAAATAACAACGGCGTAAACAACAGCAAGAGGAAACTTTTAATAGCACTAGACATCTTCTGCCTTGTCCTGGCTGTCCTGCCTTTCCTGATAATTGAAACTAGCACAATCAAGCCGTACCACCGCGGGTTTTACTGCAGTGACCAGTCCATCCAGTACCCGTATAAAAACGGGGACACCATAAGCGATGCCGTGCTCTGTGCCGCTGGCATTCTAATTGTCATCTTCTCCATTGTGATTGGCGAATGCTACAGGATCCATTACCTGAGCCAGGGCTCCAAATCGTTTGTGGGAAACCCGTATGTCTCCGCCCTTTACAGACAAGTGGGAGTGTTCATCTTCGGCTGCGCTGTCAGCCAGTCGTTCACAGACATCGCCAAGGTCTCGGTTGGACGCATGAGACCGCACTTCCTAGACGTTTGTCGGCCAAACTACTCTACTATCGACTGCTCTTTGGGATATATTACTGAATACACATGCACTGGAGATCCCAGTAAAGTTCAAGAGGCCAGGAAATCCTTCTTTTCCGGACATGCTTCATTTTCAATGTACACCATGCTCTACCTGGCATTCTACCTACAGTCTCGATTCACATGGCGAGGAGCCCGTCTCCTGAGGCCCCTGCTCCAGTTTACCTTGCTGATGATGGCCTTCTACACCGGTTTATCACGAGTGTCTGATCACAAGCACCACCCCACTGATGTCTTAGCTGGCTTTGTTCAAGGAGCCCTGGTGGCCTACTGCATAGTCTTTTATGTATCAGATCTCTTCAAACCCAAAGCTAAGACAGCCACTCCGCCGCCCTCGCCAATCAAGAAAGAGCTGCTCCCTTCTTCTGACATCATCGAGAGGAACAACCATCACAACATGGTGTAGGATGGAGGACCGGGAGTCTGCATTCCCAATCTCCCTACCCTTCACTCCACCCCTCCCTGATTCCCCTGAAGAAAACCAGAATAGCCACCTGTGACGGAGGAGGACGCCTCCTCTCTTTCTCATCTGACAGTAGAATGTAGGCACAGGACAGAGACAATCCTATTGACTCTTATTACAAATGACCTCACAATCCAAGAGCCCAATTCGAAAGGCCAAACAGACACAAAGCTAACAGAAAAAACAAGCCAATTGTCCTTCAGAATGTTGGATGACAGAAGTATTGAACGACAAGGAGAGCGTGAATGTGAGGCTGGTCTCATGACCAGCTGTTCTCTCCTTTTGTCCTTTGTAGCCTTTCAGGAACAGCTTACAACAAATTCCTTATTAATAGGAATGATGCATACCTGCGATGTAATTAGCACAGATATATTAACAGTATAATAACTTATAGCACTATATACAAATTCATGAAATGTCACCACTCGCTATCTGAGGAGCGTAGCTTCAAGAAGCTTGATGACGAGCTGATTTTGAGCTACTCGAAACAGTGGCCTAACTGCAATTTAAcgggtttgtttttttaaaggcgGGCGGGAGGGCGGGTTGggcttttaattttagatattaaATTTACAATCCCTGCTCAAACCGTGGGGCTGGGGGGCTTGGCTGAGCCATGCTGCCTCACTGTCTTCTGATTGGTCAGGGGGCAGGGTTTGACATTGGAGAGGTGTGTATTGTTACCACTGTTGACACAGGGGCGTGGCTTTGCTAGCCACCTCTCCTCACTGTCTACTGATTGGTCAGGGCGTGGGGTTAGACATCTGGGAGGTGTGCCTCATCAACATCGTTGACACAGGGGCGTGGCTGTGCCATGCCATCTAGCTGTCTTTTGATTGGTCAAAAAGTGGGAGTAGACATCCAGAAGGGTGTGTCTCATTTCTTTGTCTTGctctcttctgattggtcagtagtAAGACATCTGGAAATGTGTCTTGTCACCGCAGCTGGTGGTGGGGCGTAGCTGAGCCATGTTGCTTCTAtgtcttctgattggtcagagggTGGGGTTAGACATCAAAGGGGTGTATCTCATCTCCACAGTGGGTGGGATTGACTCCCAATTTCCCCATAGACCACACTGgcacatttttaatatttgctttgttttggaaCTGGGAATGAGCCTCTTCCGCTGGCTGGTTTGACCTCTTTCCTGTTCCGACTGCTTAAGCACTCAACTATGGTTGCGTGTTTTCACCCATAATGCCACCTGTGCCCTCTGCCTGTCCTGGCAAGAATCATACTGCCCTGAAAAAGGGGAATGTGGGGTCCCTCAGGGGGACGCTCGGTCCCTCGTTTgcatatgtgtttgtatgtgaagAAACGTAAGAAAACTGTGGACTTTTatttcttctctctttttttttttttgtttgttttttttttatggaaatgcCTTTTCTTAGCCTTGTTCTTATGATGTCGTCGTCTACTGTCCCACTTACAGCTGTACAGGACTGCCTGAATACTCCAGAAAACACATCCATACAACACAACTCAAGCTCCAAATGTGTTGCACATCCCTCCCATTGTATAGTCCGTCCTATCATTTCAACAGACCGCTTTATTTCTCTCTCAGaagtatataaataatgtatagatCACTAAAATTAACTATGTAAGATATTATTTCTGAACATGTTTAGATATATCCACTATGAATCTAAAACGCAATGTGTCATGACCtgtgtttatttacaaagtgcTGCTTTTATGAGCATtgattgaccttttttttttttaggtgactaaaatattgtaGAGTTGTGATAGTACGTTTTTAATAAACGTTGAATAAAACACATACAATTGTATCAAATTCACTATTAGTATTTTTGTATTGTCTCATTTTGTACAAAGTCAAATAATAGCGATATGTTTTTTTCTGCTAAATGTACTTAGCTCTAATACGTGTGCTTTTAAATAAAAGCTCTTTATAAacaacagcagtgtgtgtgcttgtttagtACATGGTTTTGGTTATTTAAGTTTAAGGTTTgatgctttcaagagttcacacttagctgatgattgattataagcaagtttggcatgctgtcccgggagagagccctgagctcgaaagttcttgagccctgggctccctccggtttggaggaagagaggggagcctcgagctcaggtagatctcgacaactcccctttgaTAATAGCTAAAGACTAAGATTGaaagctattaaaagatatgctgcattattagattacctgtattgaaatttagatttaacgattaacttgttgtgcatgtttttggaatgtgggaggaaatcGGAGAacccggtgaaaacccacgcaagcacgggaagaacatgcaaactacacacagaaacgaccaccggcctgttaaggaactagaaccggtgacgttcttgctgtcaggcgacagtgctagtcactgagccaccgtgctgccctatggagggaaaggtgaaacggtaggggtggaaggggggattcttcaaatcgaagatgactgtagtgaaaaaaccctggctctttattgtggttaggaatagcctgattggtggatcaagcatgctaatgcagaaccatccgtgttcaatcataatcacgtgctcctctcgaaattagtttatgaataaacttcacgtagTGATTTCAGGTCTGTTTTGACATTGAAAGAGATCATTTTAGAAAAAAGTTTAAACATCCATAAAAGAAACATAACTTGTTcagttgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat
>TCONS_00035336
CTGTCCTGCCTTTCCTGATAATTGAAACTAGCACAATCAAGCCGTACCACCGCGGGTTTTACTGCAGTGACCAGTCCATCCAGTACCCGTATAAAAACGGGGACACCATAAGCGATGCCGTGCTCTGTGCCGCTGGCATTCTAATTGTCATCTTCTCCATTGTGATTGGCGAATGCTACAGGATCCATTACCTGAGCCAGGGCTCCAAATCGTTTGTGGGAAACCCGTATGTCTCCGCCCTTTACAGACAAGTGGGAGTGTTCATCTTCGGCTGCGCTGTCAGCCAGTCGTTCACAGACATCGCCAAGGTCTCGGTTGGACGCATGAGACCGCACTTCCTAGACGTTTGTCGGCCAAACTACTCTACTATCGACTGCTCTTTGGGATATATTACTGAATACACATGCACTGGAGATCCCAGTAAAGTTCAAGAGGCCAGGAAATCCTTCTTTTCCGGACATGCTTCATTTTCAATGTACACCATGCTCTACCTGGCATTCTACCTACAGTCTCGATTCACATGGCGAGGAGCCCGTCTCCTGAGGCCCCTGCTCCAGTTTACCTTGCTGATGATGGCCTTCTACACCGGTTTATCACGAGTGTCTGATCACAAGCACCACCCCACTGATGTCTTAGCTGGCTTTGTTCAAGGAGCCCTGGTGGCCTACTGCATAGTCTTTTATGTATCAGATCTCTTCAAACCCAAAGCTAAGACAGCCACTCCGCCGCCCTCGCCAATCAAGAAAGAGCTGCTCCCTTCTTCTGACATCATCGAGAGGAACAACCATCACAACATGGTGTAGGATGGAGGACCGGGAGTCTGCATTCCCAATCTCCCTACCCTTCACTCCACCCCTCCCTGATTCCCCTGAAGAAAACCAGAATAGCCACCTGTGACGGAGGAGGACGCCTCCTCTCTTTCTCATCTGACAGTAGAATGTAGGCACAGGACAGAGACAATCCTATTGACTCTTATTACAAATGACCTCACAATCCAAGAGCCCAATTCGAAAGGCCAAACAGACACAAAGCTAACAGAAAAAACAAGCCAATTGTCCTTCAGAATGTTGGATGACAGAAGTATTGAACGACAAGGAGAGCGTGAATGTGAGGCTGGTCTCATGACCAGCTGTTCTCTCCTTTTGTCCTTTGTAGCCTTTCAGGAACAGCTTACAACAAATTCCTTATTAATAGGAATGATGCATACCTGCGATGTAATTAGCACAGATATATTAACAGTATAATAACTTATAGCACTATATACAAATTCATGAAATGTCACCACTCGCTATCTGAGGAGCGTAGCTTCAAGAAGCTTGATGACGAGCTGATTTTGAGCTACTCGAAACAGTGGCCTAACTGCAATTTAAcgggtttgtttttttaaaggcgGGCGGGAGGGCGGGTTGggcttttaattttagatattaaATTTACAATCCCTGCTCAAACCGTGGGGCTGGGGGGCTTGGCTGAGCCATGCTGCCTCACTGTCTTCTGATTGGTCAGGGGGCAGGGTTTGACATTGGAGAGGTGTGTATTGTTACCACTGTTGACACAGGGGCGTGGCTTTGCTAGCCACCTCTCCTCACTGTCTACTGATTGGTCAGGGCGTGGGGTTAGACATCTGGGAGGTGTGCCTCATCAACATCGTTGACACAGGGGCGTGGCTGTGCCATGCCATCTAGCTGTCTTTTGATTGGTCAAAAAGTGGGAGTAGACATCCAGAAGGGTGTGTCTCATTTCTTTGTCTTGctctcttctgattggtcagtagtAAGACATCTGGAAATGTGTCTTGTCACCGCAGCTGGTGGTGGGGCGTAGCTGAGCCATGTTGCTTCTAtgtcttctgattggtcagagggTGGGGTTAGACATCAAAGGGGTGTATCTCATCTCCACAGTGGGTGGGATTGACTCCCAATTTCCCCATAGACCACACTGgcacatttttaatatttgctttgttttggaaCTGGGAATGAGCCTCTTCCGCTGGCTGGTTTGACCTCTTTCCTGTTCCGACTGCTTAAGCACTCAACTATGGTTGCGTGTTTTCACCCATAATGCCACCTGTGCCCTCTGCCTGTCCTGGCAAGAATCATACTGCCCTGAAAAAGGGGAATGTGGGGTCCCTCAGGGGGACGCTCGGTCCCTCGTTTgcatatgtgtttgtatgtgaagAAACGTAAGAAAACTGTGGACTTTTatttcttctctctttttttttttttgtttgttttttttttatggaaatgcCTTTTCTTAGCCTTGTTCTTATGATGTCGTCGTCTACTGTCCCACTTACAGCTGTACAGGACTGCCTGAATACTCCAGAAAACACATCCATACAACACAACTCAAGCTCCAAATGTGTTGCACATCCCTCCCATTGTATAGTCCGTCCTATCATTTCAACAGACCGCTTTATTTCTCTCTCAGaagtatataaataatgtatagatCACTAAAATTAACTATGTAAGATATTATTTCTGAACATGTTTAGATATATCCACTATGAATCTAAAACGCAATGTGTCATGACCtgtgtttatttacaaagtgcTGCTTTTATGAGCATtgattgaccttttttttttttaggtgactaaaatattgtaGAGTTGTGATAGTACGTTTTTAATAAACGTTGAATAAAACACATACAATTGTATCAAATTCACTATTAGTATTTTTGTATTGTCTCATTTTGTACAAAGTCAAATAATAGCGATATGTTTTTTTCTGCTAAATGTACTTAGCTCTAATACGTGTGCTTTTAAATAAAAGCTCTTTATAAacaaca
>TCONS_00035337
ttgcgtaGTCATGCTGCCCTCGATGGTGTTGCATAAATCGACAGTGCAGCCGTACCAGCGTGGGTTCTACTGCTCAGACGACAGTATCCGCTACGCCTATAAAAACAGCACTGTGCCCTCCTCTGTTCTGACAGCTGTGGGCCTCCTCCTGCCCATTGCCAGCATTGTGATTGGCGAATGCTACAGGATCCATTACCTGAGCCAGGGCTCCAAATCGTTTGTGGGAAACCCGTATGTCTCCGCCCTTTACAGACAAGTGGGAGTGTTCATCTTC

Function

symbol description
plpp3 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in canonical Wnt signaling pathway; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within regulation of Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in somite and vasculature. Orthologous to human PLPP3 (phospholipid phosphatase 3).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-241 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in canonical Wnt signaling pathway; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within regulation of Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in somite and vasculature. Orthologous to human PLPP3 (phospholipid phosphatase 3).

Ensembl:

ensembl_id ENSDARG00000059933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035335 False 4465 mRNA 0.44 6 7964356 8024582
TCONS_00035336 False 2812 mRNA 0.45 5 7965215 7992496
TCONS_00035337 True 274 processed_transcript 0.53 2 7986950 7994084

Neighbor

gene id symbol gene type direction distance location
XLOC_017909 NA coding downstream 11174 7951782 ~ 7953182 (-)
XLOC_017908 CR848049.1 coding downstream 316031 7646762 ~ 7648325 (-)
XLOC_017907 NA coding downstream 325704 7612155 ~ 7638652 (-)
XLOC_017906 usp24 coding downstream 380870 7443224 ~ 7583486 (-)
XLOC_017905 dsc2l coding downstream 670519 7262434 ~ 7293837 (-)
XLOC_017911 si:ch211-232i5.3 coding upstream 57127 8081709 ~ 8094718 (-)
XLOC_017912 si:ch211-232i5.1 coding upstream 76488 8101070 ~ 8110672 (-)
XLOC_017913 NA coding upstream 98111 8122693 ~ 8443425 (-)
XLOC_017914 CR388209.2 coding upstream 769920 8794502 ~ 8835094 (-)
XLOC_017915 CR388209.1 coding upstream 912321 8936903 ~ 8937004 (-)
XLOC_017928 CU539064.1 misc upstream 2028823 10053405 ~ 10053701 (-)
XLOC_017904 NA non-coding downstream 753160 7191883 ~ 7211196 (-)
XLOC_017902 NA non-coding downstream 825214 7138063 ~ 7139142 (-)
XLOC_017896 CT583652.1 non-coding downstream 1380686 6581799 ~ 6583670 (-)
XLOC_017925 AL645822.1 non-coding upstream 1881686 9906268 ~ 9906384 (-)
XLOC_017930 NA non-coding upstream 2052575 10077157 ~ 10078215 (-)

Expression


Co-expression Network